Publications & Works

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Articles 47
All (47)
SCI-E, SSCI, AHCI (45)
SCI-E, SSCI, AHCI, ESCI (46)
Scopus (43)
TRDizin (3)

1. Lyophilized Salmonella bacteriophages remain stable and reduce pathogen loads across multiple food and feed matrices

Yetişkin S., Yücefaydali A., Özverin M., Yeniköylü F., Burtaçgiray E., Güzel M., et al.
JOURNAL OF APPLIED MICROBIOLOGY , vol.137, no.4, 2026 (SCI-Expanded, Scopus) Creative Commons License

2. Climate change-driven risks on contamination routes and timing, and phage control of Salmonella on leafy greens

Namli S., Samut H., ÇÖMLEKÇİOĞLU N., SOYER KÜÇÜKŞENEL Y.
FEMS Microbiology Ecology , vol.102, no.2, 2026 (SCI-Expanded, Scopus)

3. Whole-Genome Insights Into Tigecycline-Resistant Klebsiella Spp. Harboring Colistin Resistance Gene From Food Animals in Türkiye

KÜREKCİ C., Lu X., ŞAHİN S., SOYER KÜÇÜKŞENEL Y., Wang Z., Hammerl J. A., et al.
Transboundary and Emerging Diseases , vol.2026, no.1, 2026 (SCI-Expanded, Scopus)

4. Layer-by-Layer Coated Alginate Hydrogels with Antibacterial Activity Based on Bacteriophage and Curcumin Combination

Guren A., YÜCEFAYDALI A., GÜNDOĞDU D., Bozkurt A., BÜTÜN V., SOYER KÜÇÜKŞENEL Y., et al.
ACS Omega , vol.10, no.30, pp.33108-33123, 2025 (SCI-Expanded, Scopus)

5. Effect of egg cultivation methods on Salmonella prevalence and the promising prevention strategy: bacteriophage therapy

Koç E., YETİŞKİN S., YÜCEFAYDALI A., Tunalier D., SOYER KÜÇÜKŞENEL Y.
Food Science and Biotechnology , vol.34, no.10, pp.2361-2372, 2025 (SCI-Expanded, Scopus)

6. Detection and Whole-Genome Analysis of tigecycline resistant Escherichia coli in poultry and meat samples in Türkiye

KÜREKCİ C., Lu X., ŞAHİN S., CELİL B. G., SOYER KÜÇÜKŞENEL Y., YENİKÖYLÜ F., et al.
Poultry Science , vol.104, no.2, 2025 (SCI-Expanded, Scopus)

7. Black-carrot drink şalgam as a habitat for spoilage yeasts

Safkan D., AĞIRMAN B., SAFKAN B., SOYER KÜÇÜKŞENEL Y., ERTEN H.
Fungal Biology , vol.128, no.8, pp.2471-2478, 2024 (SCI-Expanded, Scopus)

8. Genomic analysis of Salmonella bacteriophages revealed multiple endolysin ORFs and importance of ligand-binding site of receptor-binding protein

Guzel M., YÜCEFAYDALI A., YETİŞKİN S., Deniz A., Yaşar Tel O., AKÇELİK M., et al.
FEMS Microbiology Ecology , vol.100, no.7, 2024 (SCI-Expanded, Scopus) Creative Commons License

9. Layer-by-layer assembly of chitosan/alginate thin films containing Salmonella enterica bacteriophages for antibacterial applications

Tidim G., Guzel M., Soyer Küçükşenel Y., Erel Göktepe İ.
Carbohydrate Polymers , vol.328, 2024 (SCI-Expanded, Scopus)

10. Phage Therapy Against Pathogenic Escherichia coli (O104:H4, O157:H7, and O26) Strains in Irrigation Water During Garden Cress (Lepidium sativum Linn.) Vegetation

Iskender I., Soyer Küçükşenel Y.
Foodborne pathogens and disease , vol.20, no.12, pp.553-562, 2023 (SCI-Expanded, Scopus)

11. Genomic Characterization of Salmonella enterica Resistant to Cephalosporin, Quinolones, And Macrolides

Konyali D., Guzel M., SOYER KÜÇÜKŞENEL Y.
Current Microbiology , vol.80, no.11, 2023 (SCI-Expanded, Scopus)

12. Climate change and food safety: Temperature impact on the attachment of Escherichia coli pathogroups on cress leaf

Samut H., Namli Ş., Ozdemir F. N., Çömlekçioğlu N., Soyer Y.
JOURNAL OF FOOD SAFETY , vol.43, no.5, 2023 (SCI-Expanded, Scopus) Sustainable Development

13. Emerging Increase in Colistin Resistance Rates in Escherichia coli and Salmonella enterica from Türkiye

Tok S., Guzel M., SOYER KÜÇÜKŞENEL Y.
Current Microbiology , vol.80, no.7, 2023 (SCI-Expanded, Scopus)

14. Effect of Non-LAB Probiotics on Foodborne Enteric Pathogens: A Systematic Review

Yeni F., Samut H., Soyer Y.
Food Reviews International , vol.39, no.4, pp.1827-1858, 2023 (SCI-Expanded, Scopus)

15. Microbial growth and attachment of Salmonella and enterohemorrhagic and enteroaggregative Escherichia coli strains on cress microgreens grown in peat soil system

Namli S., Samut H., Soyer Y.
BRITISH FOOD JOURNAL , vol.124, no.11, pp.3765-3782, 2022 (SCI-Expanded, Scopus) Sustainable Development

16. Investigation of class 1 integrons and virulence genes in the emergent Salmonella serovar Infantis in Turkey

Namli S., Soyer Y.
INTERNATIONAL MICROBIOLOGY , vol.25, no.2, pp.259-265, 2022 (SCI-Expanded, Scopus)

17. Antibacterial activity of cinnamon oil against multidrug-resistant Salmonella serotypes and anti-quorum sensing potential

Kiymacia M., KAŞKATEPE B., Soyerc Y.
JOURNAL OF THE HELLENIC VETERINARY MEDICAL SOCIETY , vol.73, no.1, pp.3707-3714, 2022 (SCI-Expanded, Scopus)

18. The effect of polyacid on the physical and biological properties of chitosan based layer-by-layer films

Saracogullari N., GÜNDOĞDU D., ÖZDEMİR F. N., SOYER Y., EREL GÖKTEPE İ.
COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS , vol.617, 2021 (SCI-Expanded, Scopus)

19. Determination of colistin resistance in Escherichia coli isolates from foods in Turkey, 2011-2015

GÜZEL M., Avşaroğlu M. D., SOYER Y.
Food and Health , vol.6, no.3, pp.160-169, 2020 (TRDizin)

20. Genome analysis of antimicrobial resistance, virulence, and plasmid presence in Turkish Salmonella serovar Infantis isolates

Acar S., Bulut E., Stasiewicz M. J., SOYER Y.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY , vol.307, 2019 (SCI-Expanded, Scopus) Sustainable Development

21. Isolation and molecular characterization of Salmonella enterica and Escherichia coli from poultry samples

Cesur A., Ulutas S. O., Soyer Y.
TURKISH JOURNAL OF VETERINARY & ANIMAL SCIENCES , vol.43, no.3, pp.408-422, 2019 (SCI-Expanded, Scopus, TRDizin) Sustainable Development

22. Cinnamon oil nanoemulsions by spontaneous emulsification: Formulation, characterization and antimicrobial activity

YILDIRIM S. T., Oztop M. H., SOYER Y.
LWT-FOOD SCIENCE AND TECHNOLOGY , vol.84, pp.122-128, 2017 (SCI-Expanded, Scopus)

23. Phenotyping and genetic characterization of Salmonella enterica isolates from Turkey revealing arise of different features specific to geography

Acar S., Bulut E., Durul B., Uner I., Kur M., AVŞAROĞLU ERKAN M. D., et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY , vol.241, pp.98-107, 2017 (SCI-Expanded, Scopus) Sustainable Development

24. Vulnerabilities, Threats and Gaps in Food Biosecurity

Fletcher J., ALPAS H., Henry C. M., Haynes E., Dehne H. W., Ma L. M., et al.
PRACTICAL TOOLS FOR PLANT AND FOOD BIOSECURITY: RESULTS FROM A EUROPEAN NETWORK OF EXCELLENCE, VOL 8 , vol.8, pp.61-75, 2017 (SCI-Expanded) Sustainable Development

25. How can we improve foodborne disease surveillance systems: A comparison through EU and US systems

Yenı F., Acar S., Soyer Y., Alpas H.
FOOD REVIEWS INTERNATIONAL , vol.33, pp.406-423, 2017 (SCI-Expanded, Scopus) Sustainable Development

26. Microorganisms Found in MPR and Packaged Produce and Their Detection Methods

Acar S. Y., SOYER Y.
MINIMALLY PROCESSED REFRIGERATED FRUITS AND VEGETABLES, 2ND EDITION , pp.653-684, 2017 (SCI-Expanded)

27. Recent Outbreaks of Human Pathogens on Plants (HPOPs) on Fresh Produce - Lessons Learned from the Practice

ALPAS H., Yeni F., SOYER Y., Fletcher J.
PRACTICAL TOOLS FOR PLANT AND FOOD BIOSECURITY: RESULTS FROM A EUROPEAN NETWORK OF EXCELLENCE, VOL 8 , vol.8, pp.77-96, 2017 (SCI-Expanded) Sustainable Development

28. Microbial Control of Milk and Milk Products

Guzel M., SOYER Y.
MICROBIAL CONTROL AND FOOD PRESERVATION: THEORY AND PRACTICE , pp.255-280, 2017 (Peer-Reviewed Journal) Sustainable Development

29. Most Common Foodborne Pathogens and Mycotoxins on Fresh Produce: A Review of Recent Outbreaks

Yeni F., Yavaş S., Alpas H., Soyer Y.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION , vol.56, pp.1532-1544, 2016 (SCI-Expanded, Scopus) Sustainable Development

30. Subtyping of Salmonella Food Isolates Suggests the Geographic Clustering of Serotype Telaviv

Durul B., Acar S., Bulut E., Kyere E. O., SOYER Y.
FOODBORNE PATHOGENS AND DISEASE , vol.12, no.12, pp.958-965, 2015 (SCI-Expanded, Scopus)

31. Molecular evaluation and antimicrobial susceptibility testing of Escherichia coli isolates from food products in Turkey

Kyere E. O., Bulut E., AVŞAROĞLU ERKAN M. D., SOYER Y.
FOOD SCIENCE AND BIOTECHNOLOGY , vol.24, no.3, pp.1001-1009, 2015 (SCI-Expanded, Scopus)

32. Salmonella surveillance on fresh produce in retail in Turkey

Gunel E., Kilic G. P., Bulut E., Durul B., Acar S., Alpas H., et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY , vol.199, pp.72-77, 2015 (SCI-Expanded, Scopus)

33. Rapid and standardized methods for detection of foodborne pathogens and mycotoxins on fresh produce

YENI F., ACAR S., POLAT Ö., SOYER Y., ALPAS H.
FOOD CONTROL , vol.40, pp.359-367, 2014 (SCI-Expanded, Scopus)

34. Antimicrobial Drug Resistance Patterns among Cattle- and Human-Associated Salmonella Strains

SOYER Y., Richards J., Hoelzer K., Warnick L. D., Fortes E., McDonough P., et al.
JOURNAL OF FOOD PROTECTION , vol.76, no.10, pp.1676-1688, 2013 (SCI-Expanded, Scopus)

35. The Prevalence of Multidrug Resistance Is Higher among Bovine than Human Salmonella enterica Serotype Newport, Typhimurium, and 4,5,12:i:- Isolates in the United States but Differs by Serotype and Geographic Region

Hoelzer K., Soyer Y., Rodriguez-Rivera L. D., Cummings K. J., McDonough P. L., Schoonmaker-Bopp D. J., et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY , vol.76, no.17, pp.5947-5959, 2010 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development

36. Development and validation of a resistance and virulence gene microarray targeting Escherichia coli and Salmonella enterica

Davis M. A., Lim J. Y., Soyer Y., Harbottle H., Chang Y., New D., et al.
JOURNAL OF MICROBIOLOGICAL METHODS , vol.82, no.1, pp.36-41, 2010 (SCI-Expanded, Scopus) Creative Commons License

37. Pulsed-Field Gel Electrophoresis Diversity of Human and Bovine Clinical Salmonella Isolates

Soyer Y., Alcaine S. D., Schoonmaker-Bopp D. J., Root T. P., Warnick L. D., McDonough P. L., et al.
FOODBORNE PATHOGENS AND DISEASE , vol.7, no.6, pp.707-717, 2010 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development

38. Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes

Soyer Y., Orsi R. H., Rodriguez-Rivera L. D., Sun Q., Wiedmann M.
BMC EVOLUTIONARY BIOLOGY , vol.9, 2009 (SCI-Expanded, Scopus) Creative Commons License

39. Salmonella enterica Serotype 4,5,12:i:-, an Emerging Salmonella Serotype That Represents Multiple Distinct Clones

Soyer Y., Switt A. M., Davis M. A., Maurer J., McDonough P. L., Schoonmaker-Bopp D. J., et al.
JOURNAL OF CLINICAL MICROBIOLOGY , vol.47, no.11, pp.3546-3556, 2009 (SCI-Expanded, Scopus) Creative Commons License

40. Fecal shedding of, antimicrobial resistance in, and serologic response to SalmonellaTyphimurium in dairy calves

Alexander K. A., Warnick L. D., Cripps C. J., McDonough P. L., Grohn Y. T., Wiedmann M., et al.
JAVMA-JOURNAL OF THE AMERICAN VETERINARY MEDICAL ASSOCIATION , vol.235, no.6, pp.739-748, 2009 (SCI-Expanded, Scopus)

41. Multilocus Variable-Number Tandem-Repeat Method for Typing Salmonella enterica Serovar Newport

Davis M. A., Baker K. N. K., Call D. R., Warnick L. D., Soyer Y., Wiedmann M., et al.
JOURNAL OF CLINICAL MICROBIOLOGY , vol.47, no.6, pp.1934-1938, 2009 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development

42. Emergence, Distribution, and Molecular and Phenotypic Characteristics of Salmonella enterica Serotype 4,5,12:i:-

Switt A. I. M., Soyer Y., Warnick L. D., Wiedmann M.
FOODBORNE PATHOGENS AND DISEASE , vol.6, no.4, pp.407-415, 2009 (SCI-Expanded, Scopus) Creative Commons License Sustainable Development

43. Assessing genetic heterogeneity within bacterial species isolated from gastrointestinal and environmental samples: How many isolates does it take?

Dopfer D., Buist W., Soyer Y., Munoz M. A., Zadoks R. N., Geue L., et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY , vol.74, no.11, pp.3490-3496, 2008 (SCI-Expanded, Scopus) Creative Commons License

44. Multidrug-resistant Salmonella typhimurium, Pacific Northwest, United States

Davis M. A., Besser T. E., Eckmann K., MacDonald J. K., Green D., Hancock D. D., et al.
EMERGING INFECTIOUS DISEASES , vol.13, no.10, pp.1583-1586, 2007 (SCI-Expanded, Scopus)

45. Multilocus sequence typing supports the hypothesis that cow- and human-associated Salmonella isolates represent distinct and overlapping populations

Alcaine S. D., Soyer Y., Warnick L. D., Su W. -., Sukhnanand S., Richards J., et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY , vol.72, no.12, pp.7575-7585, 2006 (SCI-Expanded, Scopus)

46. Antioxidant activity of selected fruits and vegetables grown in Turkey

Karadeniz F., Burdurlu H. S., Koca N., Soyer Y.
Turkish Journal of Agriculture and Forestry , vol.29, no.4, pp.297-303, 2005 (SCI-Expanded, Scopus, TRDizin)

47. Organic acid profile of Turkish white grapes and grape juices

Soyer Y., Koca N., Karadeniz F.
JOURNAL OF FOOD COMPOSITION AND ANALYSIS , vol.16, no.5, pp.629-636, 2003 (SCI-Expanded, Scopus)
Papers Presented at Peer-Reviewed Scientific Conferences 7

1. Antibiyotik Dirençliliğe Çözüm, Bakteriyofajlar : Salmonella Bakteriyofajı İzolasyonu

Yetişkin S., Yücefaydalı A., Ayan İ., Soyer Küçükşenel Y., Akkaya Ö. H., Türkoğlu A. Ö., et al.
2. Tek Sağlık Kongresi, Ankara, Turkey, 22 - 24 November 2023, (Unpublished) Creative Commons License

2. Antibiyotik Dirençliliğe Karşı Çözüm, Bakteriyofajlar : E. coli Bakteriyofajı İzolasyonu

Yücefaydalı A., Yetişkin S., Soyer Küçükşenel Y., Ayan İ., Akkaya Ö. H., Türkoğlu A. Ö., et al.
2. Ulusal Tek Sağlık Kongresi, Ankara, Turkey, 22 - 24 November 2023, (Unpublished)

3. Salmonella'ya Karşı Faj Endolizinleri

Yetişkin S., Yücefaydalı A., Soyer Küçükşenel Y.
Viruses of Microbes 2023, Tbilisi, Georgia, 3 - 07 July 2023, pp.118, (Summary Text) Creative Commons License

4. Salmonella bakteriyofajlarının fenotipik karakterizasyonu ve tavuk etindeki uygulamaları

Yücefaydalı A., Yetişkin S., Güzel M., Yeniköylü F., Soyer Küçükşenel Y.
Viruses of Microbes 2023, Tbilisi, Georgia, 3 - 07 July 2023, pp.217, (Summary Text)

5. Surface Functionalization via Layer-by-layer Films of Chitosan/tannic Acid and Chitosan/Poly (acrylic acid) for Biological Applications

SARAÇOĞULLARI N., GÜNDOĞDU D., ÖZDEMİR F. N., SOYER KÜÇÜKŞENEL Y., EREL GÖKTEPE İ.
16th NANOSCIENCE & NANOTECHNOLOGY CONFERENCE, Ankara, Turkey, 5 - 08 August 2022, (Summary Text)

6. Tarçın Yağı ile Hazırlanmış Mikroemülsiyon Nanoemülsiyonların Karakterizasyonu ve Antimikrobiyel Etkisnin İncelenmesi

Yıldırım S. T., SOYER Y., ÖZTOP H. M.
5. Gıda Güvenliği Kongresi, Turkey, 7 - 08 May 2015, (Summary Text)

7. Comparative Genomic Analysis of 5 fully Sequenced Salmonella Genomes

SOYER Y., Orsi R., Sun Q., Wiedmann M.
Annual Meeting of the American Society of Microbiology, Toronto, Canada, 21 - 25 May 2007
Books 5

1. Microbial Control of Milk and Milk Products

Güzel M., Soyer Y.
in: Microbial Control and Food Preservation, V.K. Juneja,H.P. Dwivedi and J.N. SofV.K. Juneja,H.P. Dwivedi and J.N. Sofos, Editor, Springer, London/Berlin , Washington, pp.255-280, 2017

2. Microorganisms Found in MPR and Packaged Produce and Their Detection Methods.

Acar S., Soyer Y.
in: Minimally Processed Refrigerated Fruits and Vegetables, F. Yildiz and R.C. WilF. Yildiz and R.C. Wiley, Editor, Springer, London/Berlin , Massachusetts, pp.653-685, 2017

3. Vulnerabilities, Threats and Gaps in Food Biosecurity

FLETCHER J., ALPAS H., HENRY C. M., HAYNES E., DEHNE H. W., MA L. M., et al.
in: Practical Tools for Plant and FoodBiosecurity Results from a European Network of Excellence, , Editor, Springer, 2017

4. Recent Outbreaks of Human Pathogens on Plants (HPOPs)on Fresh Produce – Lessons Learned from the Practice

ALPAS H., Yeni F., SOYER Y., FLETCHER J.
in: Practical Tools for Plant and Food BiosecurityResults from a European Network of Excellence, , Editor, Springer, 2017

5. Antimikrobiyal Koruyucular ve Bakteriyofajlar ile Kontrol

Bulut E., SOYER Y.
in: Temel Gida Mikrobiyolojisi, , Editor, Nobel, pp.489-503, 2016
Metrics

Publication

82

Publication (WoS)

46

Publication (Scopus)

43

Citation (WoS)

1146

H-Index (WoS)

16

Citation (Scopus)

1514

H-Index (Scopus)

18

Project

38

Intellectual Property

1

Thesis Advisory

21

Open Access

19
UN Sustainable Development Goals
SDG 1: GOAL 1: NO POVERTY
SDG 2: GOAL 2: ZERO HUNGER
SDG 3: GOAL 3: GOOD HEALTH AND WELL-BEING
SDG 4: GOAL 4: QUALITY EDUCATION
SDG 6: GOAL 6: CLEAN WATER AND SANITATION
SDG 12: GOAL 12: RESPONSIBLE CONSUMPTION AND PRODUCTION
SDG 16: GOAL 16: PEACE, JUSTICE AND STRONG INSTITUTIONS
SDG 17: GOAL 17: PARTNERSHIPS FOR THE GOALS