Prof. AYŞE ELİF ERSON BENSAN

Publication Network

Articles 53

1. 3'UTR RNA editing driven by ADAR1 modulates MDM2 expression in breast cancer cells

Almeric E., Karagozoglu D., Cicek M., Dioken D. N., Tac H. A., Cicek E., et al.

FUNCTIONAL & INTEGRATIVE GENOMICS , vol.25, no.1, 2025 (SCI-Expanded, Scopus)

2. The 3′ end of the tale—neglected isoforms in cancer

Döken D. N., Özgül İ., Erson Bensan A. E.

FEBS Letters , vol.599, no.21, pp.3029-3046, 2025 (SCI-Expanded, Scopus)

3. E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins.

Döken D. N., Özgül İ., Yilmazbilek I., Almeric E., Eroglu I. C., Cicek M., et al.

RNA biology , 2025 (SCI-Expanded, Scopus)

4. An alternatively spliced PD-L1 isoform PD-L1∆3, and PD-L2 expression in breast cancers: implications for eligibility scoring and immunotherapy response

DÖKEN D. N., ÖZGÜL İ., Yilmazbilek I., Yakicier M. C., KARACA EREK E., ERSON BENSAN A. E.

Cancer Immunology, Immunotherapy , vol.72, no.12, pp.4065-4075, 2023 (SCI-Expanded, Scopus)

5. Versatile RNA: overlooked gems of the transcriptome

ERDEM M., Cicek M., ERSON BENSAN A. E.

FEBS Journal , vol.290, no.20, pp.4843-4851, 2023 (SCI-Expanded, Scopus) Sustainable Development

6. Differential expression of mRNA 3′-end isoforms in cervical and ovarian cancers

Döken D. N., Özgül İ., Köksal Bıçakcı G., Gol K., Can T., Erson Bensan A. E.

Heliyon , vol.9, no.9, 2023 (SCI-Expanded, Scopus)

7. Assessment of silicon, glass, FR4, PDMS and PMMA as a chip material for acoustic particle/cell manipulation in microfluidics

Açıkgöz H. N., KARAMAN A., Şahin M. A., Çaylan Ö. R., Büke G. C., YILDIRIM E., et al.

Ultrasonics , vol.129, 2023 (SCI-Expanded, Scopus)

8. Differential translation of mRNA isoforms underlies oncogenic activation of cell cycle kinase Aurora A

Cacioppo R., Akman H. B., Tuncer T., ERSON BENSAN A. E., Lindon C.

eLife , vol.12, 2023 (SCI-Expanded, Scopus)

9. EGFR endocytosis: more than meets the eye

Sapmaz A., ERSON BENSAN A. E.

Oncotarget , vol.14, no.1, pp.297-301, 2023 (Scopus)

10. A C-term truncated EIF2Bγ protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2Bγ-EIF2γ interactions.

Circir A., Bicakci G. K., Savas B., Doken D. N., Henden O., Can T., et al.

Proteins , vol.90, no.3, pp.889-897, 2022 (SCI-Expanded, Scopus) Sustainable Development

11. EGF-SNX3-EGFR axis drives tumor progression and metastasis in triple-negative breast cancers

Cicek E., Circir A., Oyken M., Akbulut Caliskan O., Dioken D. N., Guntekin Ergun S., et al.

Oncogene , vol.41, no.2, pp.220-232, 2022 (SCI-Expanded, Scopus) Sustainable Development

12. Identification of an mRNA isoform switch for HNRNPA1 in breast cancers

Erdem M., Ozgul İ., Dioken D. N., Gurcuoglu I., Guntekin Ergun S., Cetin-Atalay R., et al.

Scientific Reports , vol.11, no.1, 2021 (SCI-Expanded, Scopus) Sustainable Development

13. Could MicroRNAs Be Useful Tools to Improve the Diagnosis and Treatment of Rare Gynecological Cancers? A Brief Overview.

Di Fiore R., Suleiman S., Pentimalli F., O’toole S. A., O’leary J. J., Ward M. P., et al.

International journal of molecular sciences , vol.22, no.8, 2021 (SCI-Expanded, Scopus) Sustainable Development

14. RNA-biology ruling cancer progression? Focus on 3 ' UTRs and splicing

Erson-Bensan A. E.

CANCER AND METASTASIS REVIEWS , vol.39, no.3, pp.887-901, 2020 (SCI-Expanded, Scopus) Sustainable Development

15. SNX3 (Sorting Nexin 3)

ÇİÇEK E., Hatil A. C., Oyken M., Cingoz H., Erson-Bensan A. E.

Atlas of Genetics and Cytogenetics in Oncology and Haematology , vol.24, no.9, pp.334-336, 2020 (Scopus)

16. EGFR

ERSON BENSAN A. E., ÖYKEN M., ÇIRÇIR HATIL A.

Atlas Genet Cytogenet Oncol Haematol , vol.9, 2020 (Scopus)

17. EGFR (Epidermal Growth Factor Receptor)

Hatil A. C., Çiçek E., Oyken M., Erson-Bensan A. E.

Atlas of Genetics and Cytogenetics in Oncology and Haematology , vol.24, no.9, pp.325-332, 2020 (Scopus)

18. USP32 regulates late endosomal transport and recycling through deubiquitylation of Rab7

Sapmaz A., Berlin I., Bos E., Wijdeven R. H., Janssen H., Konietzny R., et al.

NATURE COMMUNICATIONS , vol.10, 2019 (SCI-Expanded, Scopus)

19. HNRNPA1 (Heterogeneous nuclear ribonucleoprotein A1)

ERDEM M., ÖZGÜL İ., Erson-Bensan A. E.

Atlas of Genetics and Cytogenetics in Oncology and Haematology , vol.23, no.6, pp.137-142, 2019 (Scopus)

20. HNRNPA1 (Heterogeneous Nuclear Ribonucleoprotein A1

Erdem M., Özgül İ., Erson Bensan A. E.

Atlas Genet Cytogenet Oncol Haematol. , vol.0, no.0, pp.1, 2018 (Peer-Reviewed Journal)

21. ALCAM (Activated Leukocyte Cell Adhesion Molecule)

Yavuz E., ÖYKEN M., Bensan A. E.

Atlas of Genetics and Cytogenetics in Oncology and Haematology , vol.22, no.3, pp.87-92, 2018 (Scopus)

22. Alternative Polyadenylation Patterns for Novel Gene Discovery and Classification in Cancer

BEGIK O., ÖYKEN M., ALICAN T. C., CAN T., Erson-Bensan A. E.

NEOPLASIA , vol.19, no.7, pp.574-582, 2017 (SCI-Expanded, Scopus) Sustainable Development

23. m6A Modification and Implications for microRNAs.

Erson-Bensan A. E., BEGIK O.

MicroRNA (Shariqah, United Arab Emirates) , vol.6, pp.97-101, 2017 (Scopus)

24. Alternative polyadenylation and RNA-binding proteins

Erson-Bensan A. E.

JOURNAL OF MOLECULAR ENDOCRINOLOGY , vol.57, no.2, 2016 (SCI-Expanded, Scopus)

25. Alternative Polyadenylation: Another Foe in Cancer

Erson-Bensan A. E., CAN T.

MOLECULAR CANCER RESEARCH , vol.14, no.6, pp.507-517, 2016 (SCI-Expanded, Scopus)

26. Mechanisms of mRNA polyadenylation

Agus H. H., ERSON BENSAN A. E.

TURKISH JOURNAL OF BIOLOGY , vol.40, no.3, pp.529-538, 2016 (SCI-Expanded, Scopus, TRDizin) Sustainable Development

27. 3 ' UTR shortening and EGF signaling: implications for breast cancer

AKMAN H. B., ÖYKEN M., TUNCER T., CAN T., Erson-Bensan A. E.

HUMAN MOLECULAR GENETICS , vol.24, no.24, pp.6910-6920, 2015 (SCI-Expanded, Scopus)

28. ALCAM is indirectly modulated by miR-125b in MCF7 cells

AKMAN H. B., SELCUKLU S. D., DONOGHUE M. T. A., AKHAVANTABASI S., SAPMAZ A., SPILLANE C., et al.

TUMOR BIOLOGY , vol.36, no.5, pp.3511-3520, 2015 (SCI-Expanded, Scopus) Sustainable Development

29. ARID3B expression in primary breast cancers and breast cancer-derived cell lines

ERDOGAN A. S. O., OZDEMIRLER N., ÖYKEN M., ALPER M., Erson-Bensan A. E.

CELLULAR ONCOLOGY , vol.37, no.4, pp.289-296, 2014 (SCI-Expanded, Scopus) Sustainable Development

30. Introduction to microRNAs in biological systems

ERSON BENSAN A. E.

Methods , 2014 (SCI-Expanded, Scopus)

31. Alternative polyadenylation and its impact on cellular processes

AKMAN TUNCER H. B., ERSON BENSAN A. E.

MICRORNA , 2014 (Peer-Reviewed Journal)

32. Alternative polyadenylation and its impact on cellular processes.

Akman H., Erson-Bensan A. E.

MicroRNA (Shariqah, United Arab Emirates) , vol.3, pp.2-9, 2014 (Scopus)

33. Noncoding RNAs and cancer

Akman H. B., ERSON BENSAN A. E.

TURKISH JOURNAL OF BIOLOGY , vol.38, no.6, pp.817-828, 2014 (SCI-Expanded, Scopus, TRDizin) Sustainable Development

34. Estrogen-induced upregulation and 3 '-UTR shortening of CDC6

AKMAN B. H., CAN T., Erson-Bensan A. E.

NUCLEIC ACIDS RESEARCH , vol.40, no.21, pp.10679-10688, 2012 (SCI-Expanded, Scopus)

35. A sandwich hybridization base miRNA detection chip

Oktem H. A., Berkman C. C., Atilgan S., ERSON BENSAN A. E.

NEW BIOTECHNOLOGY , vol.29, 2012 (SCI-Expanded, Scopus)

36. Matrix metalloprotease 16 expression is downregulated by microRNA-146a in spontaneously differentiating Caco-2 cells

ASTARCI E., ERSON BENSAN A. E., BANERJEE S.

DEVELOPMENT GROWTH & DIFFERENTIATION , vol.54, no.2, pp.216-226, 2012 (SCI-Expanded, Scopus) Sustainable Development

37. miR-125b Targets ARID3B in Breast Cancer Cells

AKHAVANTABASI S., SAPMAZ A., TUNA S., Erson-Bensan A. E.

CELL STRUCTURE AND FUNCTION , vol.37, no.1, pp.27-38, 2012 (SCI-Expanded, Scopus)

38. Connections between CHFR, the cell cycle and chemosensitivity Are they critical in cancer?

Keller J. A., Erson-Bensan A. E., Petty E. M.

CANCER BIOLOGY & THERAPY , vol.10, no.9, pp.946-948, 2010 (SCI-Expanded, Scopus)

39. USP32 is an active, membrane-bound ubiquitin protease overexpressed in breast cancers

AKHAVANTABASI S., AKMAN H. B., SAPMAZ A., Keller J., Petty E. M., Erson A. E.

MAMMALIAN GENOME , vol.21, pp.388-397, 2010 (SCI-Expanded, Scopus) Sustainable Development

40. Characterization of microRNA-125b expression in MCF7 breast cancer cells by ATR-FTIR spectroscopy

OZEK N. S., TUNA S., Erson-Bensan A. E., Severcan F.

ANALYST , vol.135, no.12, pp.3094-3102, 2010 (SCI-Expanded, Scopus) Sustainable Development

41. miRNAs and cancer New research developments and potential clinical applications

Erson A. E., Petty E. M.

CANCER BIOLOGY & THERAPY , vol.8, no.24, pp.2317-2322, 2009 (SCI-Expanded, Scopus)

42. miRNAs and cancer: New research developments and potential clinical applications.

Erson A. E., Petty E.

Cancer biology & therapy , vol.8, pp.2317-22, 2009 (SCI-Expanded, Scopus)

43. An investigation of microRNAs mapping to breast cancer related genomic gain and loss regions

Selcuklu S. D., Yakicier M. C., Erson A. E.

CANCER GENETICS AND CYTOGENETICS , vol.189, no.1, pp.15-23, 2009 (SCI-Expanded, Scopus)

44. MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system

Erson A. E., Petty E. M.

CLINICAL GENETICS , vol.74, no.4, pp.296-306, 2008 (SCI-Expanded, Scopus) Sustainable Development

45. A parylene-based dual channel micro-electrophoresis system for rapid mutation detection via heteroduplex analysis

SUKAS S., Erson A. E., SERT C., KÜLAH H.

ELECTROPHORESIS , vol.29, no.18, pp.3752-3758, 2008 (SCI-Expanded, Scopus)

46. Overexpressed Ubiquitin Specific Proteases: Implications in the pathogenesis of breast cancer

Erson A. E., PETTY E. M.

CANCER RESEARCH , vol.66, no.8, 2006 (SCI-Expanded, Scopus) Sustainable Development

47. CHFR-associated early G(2)/M checkpoint defects in breast cancer cells

Erson A. E., PETTY E.

MOLECULAR CARCINOGENESIS , vol.39, no.1, pp.26-33, 2004 (SCI-Expanded, Scopus)

48. Overexpressed genes/ESTs and characterization of distinct amplicons on 17q23 in breast cancer cells.

Erson A. E., Niell B., DeMers S., Rouillard J., Hanash S., Petty E.

Neoplasia (New York, N.Y.) , vol.3, pp.521-6, 2001 (SCI-Expanded, Scopus) Sustainable Development

49. Overexpressed genes/ESTs and characterization of distinct amplicons on 17q23 in breast cancer cells

Erson A. E., NIELL B., DEMERS S., ROUILLARD J., HANASH S., PETTY E.

NEOPLASIA , vol.3, no.6, pp.521-526, 2001 (SCI-Expanded, Scopus) Sustainable Development

50. Mutations in the Wolfram syndrome 1 gene (WFS1) are a common cause of low frequency sensorineural hearing loss

BESPALOVA I., VAN CAMP G., BOM S., BROWN D., CRYNS K., DEWAN A., et al.

HUMAN MOLECULAR GENETICS , vol.10, no.22, pp.2501-2508, 2001 (SCI-Expanded, Scopus) Sustainable Development

51. Amplification and overexpression of multiple 17q genes in breast cancer.

Erson A. E., NIELL B., PETTY E.

AMERICAN JOURNAL OF HUMAN GENETICS , vol.69, no.4, pp.270, 2001 (SCI-Expanded, Scopus) Sustainable Development

52. Mutations in the Wolfram syndrome 1 gene (WFS1) are a common cause of low frequency sensorineural hearing loss.

Bespalova I., Van Camp G., Bom S., Brown D., Cryns K., DeWan A., et al.

AMERICAN JOURNAL OF HUMAN GENETICS , vol.69, no.4, pp.230, 2001 (SCI-Expanded, Scopus)

53. Virtual genome scan: a tool for restriction landmark-based scanning of the human genome.

Rouillard J., Erson A. E., Kuick R., Asakawa J., Wimmer K., Muleris M., et al.

Genome research , vol.11, pp.1453-9, 2001 (SCI-Expanded, Scopus)

Papers Presented at Peer-Reviewed Scientific Conferences 17

1. A 3’seq approach allows isoform discovery in ER+ breast cancer cells

DÖKEN D. N., ÇİÇEK M., Çiçek E., ÖZGÜL İ., CAN T., ERSON BENSAN A. E.

8th International Congress of the Molecular Biology Association of Turkey, İstanbul, Turkey, 9 - 12 June 2022, (Summary Text)

2. HNRNPA1 Isoform Switch in Breast Cancer

ÖZGÜL İ., Erdem M., Döken D. N., GÜRCÜOĞLU I., GÜNTEKİN ERGÜN S., Cetin Atalay R., et al.

Frontiers in Cancer Science 2021, Singapore, 1 - 03 November 2021, vol.1, pp.28, (Summary Text)

3. Alternatif poliadenilasyon, mRNA izoformları ve kanser

ERSON BENSAN A. E.

31. Ulusal Biyokimya Kongresi, Turkey, 18 - 20 December 2020, (Summary Text) Sustainable Development

4. Transkriptomun 3’ Sonu

ERSON BENSAN A. E.

13. Ulusal Tıbbi Genetik Kongresi, Antalya, Turkey, 7 - 11 November 2018, (Summary Text)

5. WLS Expression in ER+ Breast Cancers

Erson Bensan A. E., Çırçır Hatıl A.

International Congress of the Mol. Biology Association of Turkey, İzmir, Turkey, 5 - 08 September 2018, pp.72, (Summary Text) Sustainable Development

6. Investigation of a Potential APA Regulated Gene in Cancer

Erson Bensan A. E., Öyken M.

International Congress for Mol. Biol Association of Turkey, İzmir, Turkey, 5 - 08 September 2018, pp.60, (Summary Text) Sustainable Development

7. Transcription Elongation in Connection to 3’UTR Ends

ÖZGÜL İ., CAN T., ERSON BENSAN A. E.

Moleküler Biyoloji Kongresi MolBiyoKON18, İzmir, Turkey, 5 - 08 September 2018, pp.20, (Summary Text)

8. Deciphering the Cancer Transcriptome through 3’xxUTRs

ERSON BENSAN A. E.

Molekuler Biyoloji Kongresi (MolBiyoKon18), İzmir, Turkey, 5 - 08 September 2018, pp.19, (Full Text) Sustainable Development

9. Deregulated APA and cancer specific APA isoforms

Begik O., Ercan M., Cingoz H., CAN T., ÖYKEN M., Erson-Bensan A. E.

Annual Meeting of the American-Association-for-Cancer-Research (AACR), Illinois, United States Of America, 14 - 18 April 2018, vol.78, (Summary Text) Sustainable Development

10. Alternative Polyadenylation patterns for cancer classification

BEGIK O., ÖYKEN M., ÇINKILLI t., CAN T., ERSON BENSAN A. E.

HIBIT 2017, 28 - 30 June 2017, (Summary Text) Sustainable Development

11. Resolving the complexity of the cancer transcriptome through 3’ UTRs

ERSON BENSAN A. E.

HIBIT 2017, 28 - 30 June 2017, (Summary Text) Sustainable Development

12. Alternative Polyadenylation patterns for novel gene discovery and classification in cancer

BEĞİK O., ÖYKEN M., CAN T., ERSON BENSAN A. E.

Annual Meeting of the RNA Society, 30 May - 03 June 2017, (Summary Text) Sustainable Development

13. APA isoform diversity in triple negative breast cancers

AKMAN TUNCER H. B., ÖYKEN M., AĞUŞ H. H., ERDEM M., YAVUZ E., CAN T., et al.

AACR Annual Meeting, USA, Washington, United States Of America, 1 - 05 April 2017, vol.77, pp.3374, (Summary Text) Sustainable Development

14. Identification of a potential cancer related lncRNA

BEĞİK O., cinkilli t., ÖYKEN M., CAN T., ERSON BENSAN A. E.

Functional Genomics to Systems Biology-EMBO, 12 - 15 November 2016 Sustainable Development

15. 3 UTR Length Changes In Connection With Estrogen Receptor Alpha In Breast Cancer

ÖYKEN M., CAN T., ERSON BENSAN A. E.

FEBS 2016, KUSADASI, Turkey, 3 - 08 September 2016 Sustainable Development

16. 3 ' UTR lengths change in connection with estrogen receptor-alpha in breast cancer

ÖYKEN M., CAN T., Erson-Bensan A. E.

41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.207, (Summary Text) Sustainable Development

17. Characterization of a ubiquitin specific protease in the 17q23 amplicon

TUNCER H. B. A., SAPMAZ A., AKHAVANTABASI S., Erson A. E.

21st Meeting of the European-Association-for-Cancer-Research, Oslo, Norway, 26 - 29 June 2010, vol.8, pp.172, (Summary Text)

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