Asst. Prof. AYBAR CAN ACAR

Publication Network

Articles 16

1. An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data

Shojaei M., Mohammadvand N., DOĞAN T., Alkan C., Çetin Atalay R., ACAR A. C.

Computers in Biology and Medicine , vol.169, 2024 (SCI-Expanded, Scopus)

2. Transfer learning for drug-target interaction prediction

Dalkıran A., Atakan A., Rifaioğlu A. S., Martin M. J., Çetin Atalay R., Acar A. C., et al.

BIOINFORMATICS , vol.39, 2023 (SCI-Expanded, Scopus) Sustainable Development

3. ProFAB-open protein functional annotation benchmark

Ozdilek A. S., Atakan A., Özsarı G., Acar A. C., Atalay M. V., Doğan T., et al.

BRIEFINGS IN BIOINFORMATICS , vol.24, 2023 (SCI-Expanded, Scopus) Sustainable Development

4. Loss of the Nuclear Envelope Protein LAP1B Disrupts the Myogenic Differentiation of Patient-Derived Fibroblasts

Kayman Kürekçi G., Acar A. C., Dinçer P. R.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES , vol.23, no.21, 2022 (SCI-Expanded, Scopus)

5. Principal microbial groups: compositional alternative to phylogenetic grouping of microbiome data

Boyraz A., Pawlowsky-Glahn V., Jose Egozcue J., ACAR A. C.

BRIEFINGS IN BIOINFORMATICS , vol.23, 2022 (SCI-Expanded, Scopus)

6. Learning functional properties of proteins with language models

Unsal S., Atas H., ALBAYRAK M., TURHAN K., Acar A. C., DOĞAN T.

NATURE MACHINE INTELLIGENCE , vol.4, no.3, pp.227-245, 2022 (SCI-Expanded, Scopus)

7. Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools

Cetin-Atalay R., Kahraman D. C., Nalbat E., Rifaioğlu A. S., Atakan A., Dönmez A., et al.

JOURNAL OF GASTROINTESTINAL CANCER , vol.52, no.4, pp.1266-1276, 2021 (ESCI, Scopus)

8. Defining a master curve of abdominal aortic aneurysm growth and its potential utility of clinical management

Akkoyun E., Gharahi H., Kwon S. T., Zambrano B. A., Rao A., ACAR A. C., et al.

Computer Methods and Programs in Biomedicine , vol.208, 2021 (SCI-Expanded, Scopus) Sustainable Development

9. Projecting the course of COVID-19 in Turkey: A probabilistic modeling approach

Acar A. C., Er A. G., Burduroğlu H. C., Sülkü S. N., Aydin Son Y., Akin L., et al.

TURKISH JOURNAL OF MEDICAL SCIENCES , vol.51, no.1, pp.16-27, 2021 (SCI-Expanded, Scopus, TRDizin)

10. The Use of Informed Priors in Biclustering of Gene Expression with the Hierarchical Dirichlet Process

Tercan B., Acar A. C.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS , vol.17, no.5, pp.1810-1821, 2020 (SCI-Expanded, Scopus)

11. iBioProVis: interactive visualization and analysis of compound bioactivity space

Dönmez A., Rifaioğlu A. S., Acar A. C., Doğan T., Cetin-Atalay R., Atalay V.

BIOINFORMATICS , vol.36, no.14, pp.4227-4230, 2020 (SCI-Expanded, Scopus) Sustainable Development

12. Real-time Malaria Parasite Screening in Thick Blood Smears for Low-Resource Setting

Chibuta S., Acar A. C.

JOURNAL OF DIGITAL IMAGING , vol.33, no.3, pp.763-775, 2020 (SCI-Expanded, Scopus) Sustainable Development

13. Predicting abdominal aortic aneurysm growth using patient-oriented growth models with two-step Bayesian inference

Akkoyun E., Kwon S. T., Acar A. C., Lee W., Baek S.

COMPUTERS IN BIOLOGY AND MEDICINE , vol.117, 2020 (SCI-Expanded, Scopus)

14. Personalized Tumor Growth Prediction Using Multiscale Modeling

ÜNSAL S., Acar A. C., Itik M., KABATAŞ A., GEDİKLİ Ö., ÖZDEMİR F., et al.

JOURNAL OF BASIC AND CLINICAL HEALTH SCIENCES , vol.4, no.3, pp.347-363, 2020 (ESCI, TRDizin) Sustainable Development

15. mESAdb: microRNA Expression and Sequence Analysis Database

Kaya K., Karakülah G., Yakicier C., Acar A. C., Konu O.

NUCLEIC ACIDS RESEARCH , vol.39, 2011 (SCI-Expanded, Scopus)

16. The synthesis and sodium-silver ion exchange of sodalites

Acar A. C., Yucel H., Culfaz A.

CHEMICAL ENGINEERING COMMUNICATIONS , vol.190, pp.861-882, 2003 (SCI-Expanded, Scopus)

Papers Presented at Peer-Reviewed Scientific Conferences 15

1. 3D Simulation and Comparative Analysis of Immune System Cell Micro-Level Responses in Virtual Reality and Mixed Reality Environments

Kaya H. T., SÜRER E., ACAR A. C.

9th EAI International Conference on Smart Objects and Technologies for Social Goods, GOODTECHS 2023, Leiria, Portugal, 18 - 20 October 2023, vol.556 LNICST, pp.62-78, (Full Text)

2. iBioProVis: Interactive Visualization and Analysis of Compound Bioactivity Space

Dönmez A., RİFAİOĞLU A. S., ACAR A. C., DOĞAN T., Martin M. J., ATALAY R., et al.

27th Conference on Intellient Systems for Molecular Biology and 18th European Conference on Computational Biology, Basel, Switzerland, 21 - 25 July 2019, (Summary Text)

3. COMBINATION THERAPY FOR HEPATOCELLULAR CARCINOMA: A SYSTEMS BIOLOGY PERSPECTIVE ON THE SYNERGISTIC ANTITUMOR ACTIVITY OF SORAFENIB WITH PI3K/AKT PATHWAY INHIBITORS

Erşahin T., Tunçbağ N., Acar A. C., Atalay R.

50th International Liver Congress of the European-Association-for-the-Study-of-the-Liver, Vienna, Austria, 22 - 26 April 2015, vol.62, pp.464, (Summary Text)

4. Cross-Cultural Audiences and Their Perceptions of Music in a Biological Context: Transforming “Music Within” Art Installation into a Cross-Cultural Interface

Bozlak E., ACAR A. C., SÜRER E.

International “Music and Sciences” Symposium, İstanbul, Turkey, 17 - 19 April 2019, pp.57, (Summary Text)

5. Design and Evaluation of an Interactive Art Installation to Introduce 'de novo' Mutations to Different Audiences: "Music Within" Project

Bozlak E., ACAR A. C., SÜRER E.

4th EAI International Conference on Smart Objects and Technologies for Social Good, Bologna, Italy, 28 - 30 November 2018, pp.82-87, (Full Text)

6. Gene mutations involved in drug resistance in liver cancer cells using a new rna-seq data analysis workflow

Guzelcan E. A., Shojaei M., ACAR A. F., ATALAY R.

42nd European-Society-for-Medical-Oncology Congress (ESMO), Madrid, Spain, 8 - 12 September 2017, vol.28, (Summary Text) Sustainable Development

7. A framework for applying bioinformatics analysis of drug resistance to mathematical tumor models

ÜNSAL S., ACAR A. C., İTİK M., KURT B., ÜNSAL Ü., TURHAN K.

NGS Tech Applications Congress: USA, United States Of America, 25 - 26 July 2017, (Summary Text)

8. A Method Proposal for Revealing Epigenetic Immune-Escape Mechanisms Using 450k Methylation Array Data

KASAP B., ÜNSAL S., AYDIN KASAP Z., ACAR A. C., TURHAN K.

10. International Symposium on Health Informatics and Bioinformatics (HIBIT), 28 - 30 June 2017

9. Identification of Gene Mutations Involved in Drug Resistance in Liver Cancer Using Rna-Seq Data Analysis

Shojeai M., Akhan E., ACAR A. C., ATALAY R.

The International Symposium on Health Informatics and Bioinformatics, (HIBIT), 28 - 30 June 2017, (Summary Text) Sustainable Development

10. Kişiselleştirilmiş Tıp Uygulamaları ve Bir Örnek

ÜNSAL S., ACAR A. C., İTİK M., KABATAŞ A., GEDİKLİ Ö., TURHAN K.

Tıp Bilişiminde Yenilikler Sempozyumu, Turkey, 25 March 2017, (Summary Text)

11. Segmenting and Labeling Query Sequences in a Multidatabase Environment

Acar A. C., Motro A.

Confederated International Workshops and Posters: EI2N plus NSF ICE, ICSP plus INBAST, ISDE, ORM, OTMA, SWWS plus MONET plus SeDeS, and VADER, Hersonissos, Greece, 17 - 21 October 2011, vol.7044, pp.367-368, (Full Text)

12. Efficient discovery of join plans in schemaless data

ACAR A. C., Motro A.

Proceedings of the 2009 International Database Engineering Applications Symposium on - IDEAS ’xx09, Cetraro - Calabria, Italy, 16 - 18 September 2009, (Full Text)

13. Query Consolidation: Interpreting a Set of Independent Queries Using a Multidatabase Architecture in the Reverse Direction

ACAR A. C., Motro A.

14th International Workshop on New Trends in Information Integration, VLDB-NTII 2008, 24 - 30 August 2008, (Full Text)

14. Why is this User Asking so Many Questions Explaining Sequences of Queries

ACAR A. C., AMIHAI M.

18th Annual IFIP TC11/WG 11.3 Conference on Data and Applications Security, Sitges, Spain, 25 - 28 July 2004, (Full Text)

15. Utility Based Resolution of Data Inconsistencies

MOTRO A., ANOKHIN P., ACAR A. C.

Proceedings of the International Workshop on Information Quality in Information Systems, 23th ACM SIGMOD International Conference on Management of Data, 13 - 18 July 2004, (Full Text)

Books 1

1. Inferring User Goals from Sets of Independent Queries in a Multidatabase Environment

ACAR A. C., MOTRO A.

in: Advances in Intelligent Information Systems, Zbigniew W Ras, Li-Shiang Tsay, Editor, Springer, Berlin, pp.225-243, 2010

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