Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data

Shojaei M., Mohammadvand N., DOĞAN T., Alkan C., Çetin Atalay R., ACAR A. C.
Computers in Biology and Medicine , vol.169, 2024 (SCI-Expanded) identifier identifier identifier

Transfer learning for drug-target interaction prediction

Dalkıran A., Atakan A., Rifaioğlu A. S., Martin M. J., Çetin Atalay R., Acar A. C., et al.
BIOINFORMATICS , vol.39, 2023 (SCI-Expanded) Sustainable Development identifier identifier identifier

ProFAB-open protein functional annotation benchmark

Ozdilek A. S., Atakan A., Özsarı G., Acar A. C., Atalay M. V., Doğan T., et al.
BRIEFINGS IN BIOINFORMATICS , vol.24, 2023 (SCI-Expanded) Sustainable Development identifier identifier identifier

Loss of the Nuclear Envelope Protein LAP1B Disrupts the Myogenic Differentiation of Patient-Derived Fibroblasts

Kayman Kürekçi G., Acar A. C., Dinçer P. R.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES , vol.23, no.21, 2022 (SCI-Expanded) identifier identifier identifier

Principal microbial groups: compositional alternative to phylogenetic grouping of microbiome data

Boyraz A., Pawlowsky-Glahn V., Jose Egozcue J., ACAR A. C.
BRIEFINGS IN BIOINFORMATICS , vol.23, 2022 (SCI-Expanded) identifier identifier identifier

Learning functional properties of proteins with language models

Unsal S., Atas H., ALBAYRAK M., TURHAN K., Acar A. C., DOĞAN T.
NATURE MACHINE INTELLIGENCE , vol.4, no.3, pp.227-245, 2022 (SCI-Expanded) identifier identifier

Defining a master curve of abdominal aortic aneurysm growth and its potential utility of clinical management

Akkoyun E., Gharahi H., Kwon S. T., Zambrano B. A., Rao A., ACAR A. C., et al.
Computer Methods and Programs in Biomedicine , vol.208, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

Projecting the course of COVID-19 in Turkey: A probabilistic modeling approach

Acar A. C., Er A. G., Burduroğlu H. C., Sülkü S. N., Aydin Son Y., Akin L., et al.
TURKISH JOURNAL OF MEDICAL SCIENCES , vol.51, no.1, pp.16-27, 2021 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier identifier

The Use of Informed Priors in Biclustering of Gene Expression with the Hierarchical Dirichlet Process

Tercan B., Acar A. C.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS , vol.17, no.5, pp.1810-1821, 2020 (SCI-Expanded) identifier identifier identifier

iBioProVis: interactive visualization and analysis of compound bioactivity space

Dönmez A., Rifaioğlu A. S., Acar A. C., Doğan T., Cetin-Atalay R., Atalay V.
BIOINFORMATICS , vol.36, no.14, pp.4227-4230, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Real-time Malaria Parasite Screening in Thick Blood Smears for Low-Resource Setting

Chibuta S., Acar A. C.
JOURNAL OF DIGITAL IMAGING , vol.33, no.3, pp.763-775, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Predicting abdominal aortic aneurysm growth using patient-oriented growth models with two-step Bayesian inference

Akkoyun E., Kwon S. T., Acar A. C., Lee W., Baek S.
COMPUTERS IN BIOLOGY AND MEDICINE , vol.117, 2020 (SCI-Expanded) identifier identifier identifier

mESAdb: microRNA Expression and Sequence Analysis Database

Kaya K., Karakülah G., Yakicier C., Acar A. C., Konu O.
NUCLEIC ACIDS RESEARCH , vol.39, 2011 (SCI-Expanded) identifier identifier identifier

The synthesis and sodium-silver ion exchange of sodalites

Acar A. C., Yucel H., Culfaz A.
CHEMICAL ENGINEERING COMMUNICATIONS , vol.190, pp.861-882, 2003 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools

Cetin-Atalay R., Kahraman D. C., Nalbat E., Rifaioğlu A. S., Atakan A., Dönmez A., et al.
JOURNAL OF GASTROINTESTINAL CANCER , vol.52, no.4, pp.1266-1276, 2021 (ESCI) identifier identifier identifier

Personalized Tumor Growth Prediction Using Multiscale Modeling

ÜNSAL S., Acar A. C., Itik M., KABATAŞ A., GEDİKLİ Ö., ÖZDEMİR F., et al.
JOURNAL OF BASIC AND CLINICAL HEALTH SCIENCES , vol.4, no.3, pp.347-363, 2020 (ESCI) Sustainable Development identifier

Refereed Congress / Symposium Publications in Proceedings

3D Simulation and Comparative Analysis of Immune System Cell Micro-Level Responses in Virtual Reality and Mixed Reality Environments

Kaya H. T., Sürer E., Acar A. C.
EAI GOODTECHS 2023 - 9th EAI International Conference on Smart Objects and Technologies for Social Good. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, Coimbra, Portugal, 18 - 20 October 2023, vol.556, pp.62-78

iBioProVis: Interactive Visualization and Analysis of Compound Bioactivity Space

Dönmez A., RİFAİOĞLU A. S., ACAR A. C., DOĞAN T., Martin M. J., ATALAY R., et al.
27th Conference on Intellient Systems for Molecular Biology and 18th European Conference on Computational Biology, Basel, Switzerland, 21 - 25 July 2019

COMBINATION THERAPY FOR HEPATOCELLULAR CARCINOMA: A SYSTEMS BIOLOGY PERSPECTIVE ON THE SYNERGISTIC ANTITUMOR ACTIVITY OF SORAFENIB WITH PI3K/AKT PATHWAY INHIBITORS

Erşahin T., Tunçbağ N., Acar A. C., Atalay R.
50th International Liver Congress of the European-Association-for-the-Study-of-the-Liver, Vienna, Austria, 22 - 26 April 2015, vol.62, pp.464

Cross-Cultural Audiences and Their Perceptions of Music in a Biological Context: Transforming “Music Within” Art Installation into a Cross-Cultural Interface

Bozlak E., ACAR A. C., SÜRER E.
International “Music and Sciences” Symposium, İstanbul, Turkey, 17 - 19 April 2019, pp.57 Creative Commons License

Design and Evaluation of an Interactive Art Installation to Introduce 'de novo' Mutations to Different Audiences: "Music Within" Project

Bozlak E., ACAR A. C., SÜRER E.
4th EAI International Conference on Smart Objects and Technologies for Social Good, Bologna, Italy, 28 - 30 November 2018, pp.82-87 identifier identifier

Gene mutations involved in drug resistance in liver cancer cells using a new rna-seq data analysis workflow

Guzelcan E. A., Shojaei M., ACAR A. F., ATALAY R.
42nd European-Society-for-Medical-Oncology Congress (ESMO), Madrid, Spain, 8 - 12 September 2017, vol.28 Sustainable Development identifier

A framework for applying bioinformatics analysis of drug resistance to mathematical tumor models

ÜNSAL S., ACAR A. C., İTİK M., KURT B., ÜNSAL Ü., TURHAN K.
NGS Tech Applications Congress: USA, United States Of America, 25 - 26 July 2017

A Method Proposal for Revealing Epigenetic Immune-Escape Mechanisms Using 450k Methylation Array Data

KASAP B., ÜNSAL S., AYDIN KASAP Z., ACAR A. C., TURHAN K.
10. International Symposium on Health Informatics and Bioinformatics (HIBIT), 28 - 30 June 2017

Identification of Gene Mutations Involved in Drug Resistance in Liver Cancer Using Rna-Seq Data Analysis

Shojeai M., Akhan E., ACAR A. C., ATALAY R.
The International Symposium on Health Informatics and Bioinformatics, (HIBIT), 28 - 30 June 2017 Sustainable Development

Kişiselleştirilmiş Tıp Uygulamaları ve Bir Örnek

ÜNSAL S., ACAR A. C., İTİK M., KABATAŞ A., GEDİKLİ Ö., TURHAN K.
Tıp Bilişiminde Yenilikler Sempozyumu, Turkey, 25 March 2017

Segmenting and Labeling Query Sequences in a Multidatabase Environment

Acar A. C., Motro A.
Confederated International Workshops and Posters: EI2N plus NSF ICE, ICSP plus INBAST, ISDE, ORM, OTMA, SWWS plus MONET plus SeDeS, and VADER, Hersonissos, Greece, 17 - 21 October 2011, vol.7044, pp.367-368 Creative Commons License identifier identifier

Efficient discovery of join plans in schemaless data

ACAR A. C., Motro A.
Proceedings of the 2009 International Database Engineering Applications Symposium on - IDEAS ’xx09, Cetraro - Calabria, Italy, 16 - 18 September 2009 Creative Commons License identifier

Query Consolidation: Interpreting a Set of Independent Queries Using a Multidatabase Architecture in the Reverse Direction

ACAR A. C., Motro A.
14th International Workshop on New Trends in Information Integration, VLDB-NTII 2008, 24 - 30 August 2008

Why is this User Asking so Many Questions Explaining Sequences of Queries

ACAR A. C., AMIHAI M.
18th Annual IFIP TC11/WG 11.3 Conference on Data and Applications Security, Sitges, Spain, 25 - 28 July 2004 identifier

Utility Based Resolution of Data Inconsistencies

MOTRO A., ANOKHIN P., ACAR A. C.
Proceedings of the International Workshop on Information Quality in Information Systems, 23th ACM SIGMOD International Conference on Management of Data, 13 - 18 July 2004 identifier

Books & Book Chapters

Inferring User Goals from Sets of Independent Queries in a Multidatabase Environment

ACAR A. C., MOTRO A.
in: Advances in Intelligent Information Systems, Zbigniew W Ras, Li-Shiang Tsay, Editor, Springer, Berlin, pp.225-243, 2010

Metrics

Publication

33

Citation (WoS)

188

H-Index (WoS)

6

Citation (Scopus)

255

H-Index (Scopus)

7

Citation (Scholar)

327

H-Index (Scholar)

9

Citiation (TrDizin)

4

H-Index (TrDizin)

1

Project

11

Intellectual Property

1

Thesis Advisory

33

Open Access

19
UN Sustainable Development Goals