Published journal articles indexed by SCI, SSCI, and AHCI
Large-Scale Signaling Network Reconstruction
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
, vol.9, pp.1696-1708, 2012 (SCI-Expanded)



Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS
, vol.4, no.6, pp.701-721, 2010 (SCI-Expanded)



Articles Published in Other Journals
Refereed Congress / Symposium Publications in Proceedings
Transcription Elongation in Connection to 3’UTR Ends
Moleküler Biyoloji Kongresi MolBiyoKON18, İzmir, Turkey, 5 - 08 September 2018, pp.20
Alternative Polyadenylation patterns for novel gene discovery and classification in cancer
Annual Meeting of the RNA Society, 30 May - 03 June 2017

Identification of a potential cancer related lncRNA
Functional Genomics to Systems Biology-EMBO, 12 - 15 November 2016

3 UTR Length Changes In Connection With Estrogen Receptor Alpha In Breast Cancer
FEBS 2016, KUSADASI, Turkey, 3 - 08 September 2016

Reconstruction of the Temporal Signaling Network in Salmonella Infected Human Cells
23rd Annual International Conference on Intelligent Systems for Molecular Biology and the 14th European Conference on Computational Biology (ISMBECCB’2015), Dublin, Ireland, 10 - 14 July 2015
Books & Book Chapters