Assoc. Prof.YEŞİM AYDIN SON


Graduate School of Informatics, Medical Informatics


Research Areas: Computer Sciences, bioinformatics, Life Sciences, Bioinformatics, Molecular Biology and Genetics, Genetic Disorders, Genomics, Natural Sciences, Engineering and Technology


Names in Publications: YEŞİM AYDIN-SON, Son YA

Metrics

Publication

50

Citation (WoS)

843

H-Index (WoS)

7

Citation (Scopus)

899

H-Index (Scopus)

8

Project

7

Thesis Advisory

30

Open Access

23
UN Sustainable Development Goals

Biography

Dr. Yeşim Aydın Son is a medical scientist holding an M.D. and a Ph.D. in Genome Sciences and Technologies. She is a full-time faculty of METU Graduate School of Informatics since 2010 and promoted to the Assoc. Prof. position in the Bioinformatics Program in 2017. The main focus of her research is the modeling of chronic and complex diseases based on integrated genomic and clinical data. Her group has released a java based integrated software called METU-SNP, for genome-wide association and prioritization of SNP biomarkers through a novel AHP based algorithm. Her group continues to investigate the application of different data mining approaches to better associate genotyping data with diseases. They have proposed the SVM-ID3 hybrid method in 2014, which has been shown to outperform only the SVM method for the modeling of prostate cancer. Genomic Data-based modeling of Schizophrenia, Bipolar Disorder, Alzheimer’s and Parkinson’s disease, are among her ongoing projects.

Education Information

2007 - 2009

2007 - 2009

Post Doctorate

City of Hope National Cancer Center, Beckman Research Institute, Molecular Medicine, United States Of America

2000 - 2006

2000 - 2006

Doctorate

University of Tennessee, Knoxville, Life Sciences, Graduate School of Genome Sciences And Technology, United States Of America

1993 - 1999

1993 - 1999

Doctorate

Hacettepe University, Tıp Fakültesi (Türkçe), Tıp Fakültesi, Turkey

Dissertations

2006

2006

Doctorate

DIFFERENTIAL EXPRESSION OF SKINCANCER AND HAIR-FOLLICLE CYCLEREGULATED GENES IN TUMORSUSCEPTIBLE K14-AGOUTI MICE

University Of Tennessee, Knoxville, Genome Science And Technology

Foreign Languages

C1 Advanced

C1 Advanced

English

Research Areas

Computer Sciences

bioinformatics

Life Sciences

Bioinformatics

Molecular Biology and Genetics

Genetic Disorders

Genomics

Natural Sciences

Engineering and Technology

Academic Titles / Tasks

2017 - Continues

2017 - Continues

Associate Professor

Middle East Technical University, Graduate School Of Informatics, Medical Informatics

2010 - 2017

2010 - 2017

Assistant Professor

Middle East Technical University, Graduate School Of Informatics, Medical Informatics

2009 - 2010

2009 - 2010

Lecturer PhD

Middle East Technical University, Graduate School Of Informatics, Medical Informatics

Managerial Experience

2012 - Continues

2012 - Continues

Head of Department

Middle East Technical University, Graduate School of Informatics, Medical Informatics

2010 - 2012

2010 - 2012

Enstitü Yönetim Kurulu Üyesi

Middle East Technical University, Graduate School of Informatics, Medical Informatics

2010 - 2012

2010 - 2012

Program Koordinatörü

Middle East Technical University, Graduate School of Informatics, Medical Informatics

Courses

Postgraduate

Postgraduate

Introduction to Medical Informatics

Postgraduate

Postgraduate

Next Generation Sequence Analysis

Doctorate

Doctorate

MICROARRAY DATA ANALYSIS AND INFORMATICS

Postgraduate

Postgraduate

CLINICAL BIOINFORMATICS

Postgraduate

Postgraduate

PROTEIN AND DNA SEQUENCE ANALYSIS

Postgraduate

Postgraduate

Futures Studies in Healthcare

Advising Theses

2014

2014

Postgraduate

Integration of metu-snp databases via rdf for pi-snp web service

AYDIN SON Y. (Consultant)

C.GEDİKOĞLU(Student)

2013

2013

Postgraduate

A framework for gene co-expression network analysis of lung cancer

CAN T. (Co-Consultant), AYDIN SON Y. (Co-Consultant)

E.AKDEMİR(Student) Creative Commons License Sustainable Development

Published journal articles indexed by SCI, SSCI, and AHCI

2015

2015

Evaluation of Whole Genome Association Study Data in Bipolar Disorders: Potential Novel SNPs and Genes

Cengiz Han A., Aydin Son Y., Çelik C., Recep T.

KLINIK PSIKOFARMAKOLOJI BULTENI-BULLETIN OF CLINICAL PSYCHOPHARMACOLOGY, vol.25, pp.12-18, 2015 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

2012

2012

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012: Preface

AYDIN SON Y., CAN T.

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012, 2012 (Scopus) identifier

2011

2011

METU-SNP: an integrated software system for SNP-complex disease association analysis.

Ustünkar G., Aydin Son Y.

Journal of integrative bioinformatics, vol.8, no.1, pp.187, 2011 (Scopus) Sustainable Development identifier identifier

Refereed Congress / Symposium Publications in Proceedings

2018

2018

From NGS to Protein Function: A workflow for evaluation of SNVs based on their impact on the protein function

Yazar Ö. F. , Yazar Untekin B., AYDIN SON Y.

11th International Conference on Health Informatics and Bioinformatics, October 2018, Belek, Antalya, Antalya, Turkey, 26 - 28 October 2018

2018

2018

Türkiye’de Genetik ve Genomik Test Raporlamadaki Güncel Durum

ŞIK A. S. , AYDIN SON Y., AYDINOĞLU A. U. , SOYSAL E.

STS TURKEY 2018 Toplum için Bilim ve Teknoloji Çalışmaları Konferansı, Ankara, Turkey, 10 - 11 September 2018

2017

2017

Meme Kanserinde Terapötik Hedef Olarak Kullanılabilecek Özgül Metastaz Baskılayıcı MikroRNA’ların Tespiti

EKENEL E., ERGENE E., AYDIN SON Y.

19. Ulusal, Uluslararası Katılımlı Biyotoknoloji Kongresi, Eskişehir, Turkey, 1 - 03 December 2017 Sustainable Development

2017

2017

Genome-wide Analysis of Splice Acceptor Site Motifs

BAHÇE KARADUMAN G., AYDIN SON Y.

HIBIT 2017, Güzelyurt, Cyprus (Kktc), 28 - 30 June 2017

2015

2015

Genomic Disease Modelling

AYDIN SON Y.

9th International Symposium on Health Informatics and BioinformaticsHIBIT 2015, Muğla, Turkey, 16 - 17 October 2015

2015

2015

Reconstruction of the Temporal Signaling Network in Salmonella Infected Human Cells

güngör b., EREN ÖZSOY Ö., AYDIN SON Y., CAN T., nurcan t.

23rd Annual International Conference on Intelligent Systems for Molecular Biology and the 14th European Conference on Computational Biology (ISMBECCB’2015), Dublin, Ireland, 10 - 14 July 2015

2014

2014

A novel SVM-ID3 Hybrid Feature Selection Method to Build a Disease Model for Melanoma using Integrated Genotyping and Phenotype Data from dbGaP

AYDIN SON Y., YÜCEBAŞ S. C.

25th European Medical Informatics Conference (MIE), İstanbul, Turkey, 31 August - 03 September 2014, vol.205, pp.501-505 identifier identifier identifier

2014

2014

Predicting the Disease of Alzheimer With SNP Biomarkers and Clinical Data Using Data Mining Classification Approach: Decision Tree

Erdogan O., AYDIN SON Y.

25th European Medical Informatics Conference (MIE), İstanbul, Turkey, 31 August - 03 September 2014, vol.205, pp.511-515 identifier identifier identifier

2014

2014

rs10739592 is a New Candidate Loci for Type 2 Diabetes Risk in Men

Gul H., AYDIN SON Y., Acikel C.

25th European Medical Informatics Conference (MIE), İstanbul, Turkey, 31 August - 03 September 2014, vol.205, pp.1268 Sustainable Development identifier identifier

2013

2013

Use of open linked data in bioinformatics space: A case study

Çelebi R., GÜMÜŞ Ö., AYDIN SON Y.

2013 8th International Symposium on Health Informatics and Bioinformatics, HIBIT 2013, Ankara, Turkey, 25 - 27 September 2013 identifier

2012

2012

M4B: A novel method for designing and ordering of the genetic devices

Hashemikhabir S., Ersoy G., Oguz G., Yaldiz B., Tuncel Y., Budak G., et al.

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012, Cappadocia, Turkey, 19 - 22 April 2012, pp.123-127 identifier

2012

2012

iSNP: An integrated, automatically updated SNP database

Çarkacioǧlu L., Gedikoǧlu C., AYDIN SON Y.

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012, Cappadocia, Turkey, 19 - 22 April 2012, pp.114-117 identifier

2012

2012

GWAS with AHP based SNP prioritization approach to identify SNP biomarkers for Alzheimer's disease

Kadioǧlu O., Üstünkar G., AYDIN SON Y.

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012, Cappadocia, Turkey, 19 - 22 April 2012, pp.7-10 identifier

2012

2012

Building Dicer1 regulation network of mouse liver hepatocytes

Ünsal Ş., Beyge M., AYDIN SON Y.

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012, Cappadocia, Turkey, 19 - 22 April 2012, pp.88-94 identifier

2010

2010

Analysis of SNP-Complex Disease Association by a Novel Feature Selection Method

Ustunkar G., AKYÜZ S., Weber G. -. , AYDIN SON Y.

Annual International Conference of the German-Operations-Research-Society (GOR), Neubiberg, Germany, 1 - 03 September 2010, pp.21-26 identifier

Books & Book Chapters

2019

2019

Dizi Karşılaştırmaları ve Dizi-Temelli Veri Tabanı Aramaları

AYDIN SON Y., TAŞKIN B.

in: Uygulamalı Biyoenformatik, Münir Tunçer, Hilal Ay, Editor, Palme, pp.35-49, 2019

2014

2014

Emerging Technologies in Health Information Systems: Genomics Driven Wellness Tracking and Management System (GO-WELL)

Beyan T., Aydin Son Y.

in: Big Data and Internet of Things: A Roadmap for Smart Environments, N. Bessis and C. Dobre, Editor, Springer, London/Berlin , London, pp.315-339, 2014 Creative Commons License

Supported Projects

2021 - Continues

2021 - Continues

Canlı sinir hücre hatlarında proteinprotein etkileşimlerinin incelenmesi için SPOCK1 geninin işaretlenmesi

Project Supported by Higher Education Institutions

AYDIN SON Y. (Executive), DURSUN USAL T.

Memberships / Tasks in Scientific Organizations

2022 - Continues

2022 - Continues

Türkiye Sağlık Enstitüleri Başkanlığı (TÜSEB)Sustainable Development

Member of Science Committee

2012 - Continues

2012 - Continues

Tıp Bilişimi Derneği

Board Member

2012 - 2014

2012 - 2014

Tıp Bilişimi Derneği

Secretary General

Scientific Consultations

2016 - 2018

2016 - 2018

Scientific Consultancy

TÜSEB

Middle East Technical University, Graduate School Of Informatics, Medical Informatics, Turkey

2014 - 2016

2014 - 2016

Project Consultancy

AKGÜN

Middle East Technical University, Graduate School Of Informatics, Medical Informatics, Turkey



Citations

Total Citations (WOS): 843

h-index (WOS): 7