Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Utilization of cross-correlation function for assessment of replication quality in ultrasonic embossing of microchannels on polymethyl methacrylate

Yildirim E., Ulku M. K., Arikan M. A. S.
Polymer Engineering and Science , vol.64, no.7, pp.3227-3242, 2024 (SCI-Expanded) identifier identifier

Humanized brain organoids-on-chip integrated with sensors for screening neuronal activity and neurotoxicity

Saglam-Metiner P., YILDIRIM E., Dincer C., Basak O., Yesil-Celiktas O.
Microchimica Acta , vol.191, no.1, 2024 (SCI-Expanded) identifier identifier identifier

Analytical Validation of a Spiral Microfluidic Chip with Hydrofoil-Shaped Pillars for the Enrichment of Circulating Tumor Cells

Sen-Dogan B., Demir M. A., Sahin B., YILDIRIM E., Karayalcin G., Sahin S., et al.
BIOSENSORS-BASEL , vol.13, no.10, 2023 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

Platform-agnostic electrochemical sensing app and companion potentiostat

Manoharan V., Rodrigues R., Sadati S., Swann M. J., Freeman N., Du B., et al.
Analyst , vol.148, no.19, pp.4857-4868, 2023 (SCI-Expanded) Creative Commons License identifier identifier identifier

Microfluidic-based blood immunoassays

TORUL H., Arslan Z. Ç., Tezcan T., Kayiş E. Ç., Çalımcı M., Gumustas A., et al.
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS , vol.228, 2023 (SCI-Expanded) Sustainable Development identifier identifier identifier

Assessment of silicon, glass, FR4, PDMS and PMMA as a chip material for acoustic particle/cell manipulation in microfluidics

Açıkgöz H. N., KARAMAN A., Şahin M. A., Çaylan Ö. R., Büke G. C., YILDIRIM E., et al.
Ultrasonics , vol.129, 2023 (SCI-Expanded) identifier identifier identifier

Escherichia coli Enumeration in a Capillary-Driven Microfluidic Chip with SERS

Doğan Ü., Sucularli F., Yildirim E., Çetin D., Suludere Z., Boyaci I. H., et al.
BIOSENSORS-BASEL , vol.12, no.9, 2022 (SCI-Expanded) identifier identifier identifier

Development of a microfluidic platform to maintain viability of micro-dissected tumor slices in culture

Parsian M., MUTLU P., YILDIRIM E., Ildiz C., ÖZEN C., GÜNDÜZ U.
Biomicrofluidics , vol.16, no.3, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

A capillary driven microfluidic chip for SERS based hCG detection

Ahi E. E., TORUL H., Zengin A., Sucularli F., YILDIRIM E., Selbes Y., et al.
BIOSENSORS & BIOELECTRONICS , vol.195, 2022 (SCI-Expanded) identifier identifier identifier

A microfluidic device enabling drug resistance analysis of leukemia cells via coupled dielectrophoretic detection and impedimetric counting

Demircan Yalçın Y., Töral T. B., Sukas S., YILDIRIM E., Zorlu Ö., Gündüz U., et al.
Scientific Reports , vol.11, no.1, 2021 (SCI-Expanded) identifier identifier identifier

Flow rate-controlled pipetting for microfluidics: second-generation flexible hydraulic reservoir (FHRv2)

Atay A., Topuz A., Sariarslan B., YILDIRIM E., Charmet J., Couling K., et al.
MICROFLUIDICS AND NANOFLUIDICS , vol.25, no.1, 2021 (SCI-Expanded) identifier identifier

A Novel Microfluidic Method Utilizing a Hydrofoil Structure to Improve Circulating Tumor Cell Enrichment: Design and Analytical Validation

Özkayar G., Mutlu E., Şahin Ş., Demircan Yalçın Y., Töral T., Külah H., et al.
MICROMACHINES , vol.11, no.11, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Modeling and fabrication of electrostatically actuated diaphragms for on-chip valving of MEMS-compatible microfluidic systems

Atik A. C., Ozkan M. D., Ozgur E., Külah H., Yıldırım E.
JOURNAL OF MICROMECHANICS AND MICROENGINEERING , vol.30, no.11, 2020 (SCI-Expanded) Creative Commons License identifier identifier

Multiplex enumeration ofEscherichia coliandSalmonella enteritidisin a passive capillary microfluidic chip

Dogan U., Kasap E. N., Sucularli F., Yıldırım E., Tamer U., Cetin D., et al.
ANALYTICAL METHODS , vol.12, pp.3788-3796, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Low-Cost Microfabrication Tool Box

Charmet J., Rodrigues R., YILDIRIM E., Challa P. K., Roberts B., Dallmann R., et al.
MICROMACHINES , vol.11, no.2, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Investigation of process-affected zone in ultrasonic embossing of microchannels on thermoplastic substrates

Sucularli F., ARIKAN M. A. S., YILDIRIM E.
JOURNAL OF MANUFACTURING PROCESSES , vol.50, pp.394-402, 2020 (SCI-Expanded) identifier identifier

Fast fluorometric enumeration of E. coli using passive chip

KASAP E. N., DOĞAN Ü., ÇOĞUN F., YILDIRIM E., BOYACI İ. H., ÇETİN D., et al.
JOURNAL OF MICROBIOLOGICAL METHODS , vol.164, 2019 (SCI-Expanded) identifier identifier identifier

Numerical study on effects of computational domain length on flow field in standing wave thermoacoustic couple

MERGEN S., YILDIRIM E., TÜRKOĞLU H.
CRYOGENICS , vol.98, pp.139-147, 2019 (SCI-Expanded) identifier identifier

SERS-based ultrafast and sensitive detection of luteinizing hormone in human serum using a passive microchip

Gjergjizi B., Çoğun F., YILDIRIM E., ERYILMAZ M., Selbes Y., SAĞLAM N., et al.
SENSORS AND ACTUATORS B-CHEMICAL , vol.269, pp.314-321, 2018 (SCI-Expanded) identifier identifier

A novel zero-dead-volume sample loading interface for microfluidic devices: flexible hydraulic reservoir (FHR)

Hatipoğlu U., ÇETİN B., YILDIRIM E.
JOURNAL OF MICROMECHANICS AND MICROENGINEERING , vol.28, no.9, 2018 (SCI-Expanded) Creative Commons License identifier identifier

Analysis and testing of a contraction-and-expansion micromixer for micromilled microfluidics

YILDIRIM E.
MICROSYSTEM TECHNOLOGIES-MICRO-AND NANOSYSTEMS-INFORMATION STORAGE AND PROCESSING SYSTEMS , vol.23, no.10, pp.4797-4804, 2017 (SCI-Expanded) identifier identifier

Implementation and characterization of an absorption filter for on-chip fluorescent imaging

YILDIRIM E., ARPALİ Ç., Arpali S. A.
SENSORS AND ACTUATORS B-CHEMICAL , vol.242, pp.318-323, 2017 (SCI-Expanded) identifier identifier

Investigation on replication of microfluidic channels by hot embossing

Cogun F., Yıldırım E., Arıkan M. A. S.
MATERIALS AND MANUFACTURING PROCESSES , vol.32, pp.1838-1844, 2017 (SCI-Expanded) identifier identifier

Phaseguide assisted liquid lamination for magnetic particle-based assays

Phurimsak C., YILDIRIM E., Tarn M. D., Trietsch S. J., Hankemeier T., Pamme N., et al.
LAB ON A CHIP , vol.14, no.13, pp.2334-2343, 2014 (SCI-Expanded) Creative Commons License identifier identifier identifier

Phaseguides as tunable passive microvalves for liquid routing in complex microfluidic networks

YILDIRIM E., Trietsch S. J., Joore J., van den Berg A., Hankemeier T., Vulto P.
LAB ON A CHIP , vol.14, no.17, pp.3334-3340, 2014 (SCI-Expanded) identifier identifier identifier

A normally closed electrostatic parylene microvalve for micro total analysis systems

Yildirim E., ARIKAN M. F., KÜLAH H.
SENSORS AND ACTUATORS A-PHYSICAL , vol.181, pp.81-86, 2012 (SCI-Expanded) identifier identifier

Electrostatic energy harvesting by droplet-based multi-phase microfluidics

Yildirim E., KÜLAH H.
MICROFLUIDICS AND NANOFLUIDICS , vol.13, no.1, pp.107-111, 2012 (SCI-Expanded) identifier identifier

Analysis and characterization of an electrostatically actuated in-plane parylene microvalve

Yildirim E., KÜLAH H.
JOURNAL OF MICROMECHANICS AND MICROENGINEERING , vol.21, no.10, 2011 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

Design of a microfluidic device for immunoaffinity-based isolation of circulating tumor cells with minimal clogging

Sen-Dogan B., Yıldırım E., Sahin S., Ozgur E., Zorlu O., Külah H.
SENSORS AND ACTUATORS REPORTS , vol.6, 2023 (ESCI) Sustainable Development identifier identifier

Modeling and Analysis of a Microfluidic Capillary Valve

YILDIRIM E.
Politeknik Dergisi , vol.20, pp.487-494, 2017 (Peer-Reviewed Journal) identifier

MEMS Malzeme Karakterizasyonu için Bütünlesik bir Elektrostatik Mikro Bükülme Test Yapısı Tasarımı ve Gerçeklestirilmesi

YILDIRIM E., AKIN T., ARIKAN M. A. S.
Cankaya University Journal of Science and Engineering , vol.9, pp.9-23, 2012 (Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

Analysis of Acoustically Actuated Sedimentation Prevention System for Syringe Pumps

KAYA A., ÖNER G., ERGÜVEN Ö. F., YILDIRIM E., ALMUS F. G.
19th INTERNATIONAL CONFERENCE ON MACHINE DESIGN AND PRODUCTION, Aksaray, Turkey, 31 August 2022

Design of An Anti-Sedimentation Syringe Pump for Microfluidics Applications

KOYUNCU E., KOÇUM A. T., KOÇ E., KÜÇÜKGENÇ C., KURTOĞLU B., KARAKAŞ O., et al.
19th INTERNATIONAL CONFERENCE ON MACHINE DESIGN AND PRODUCTION, Aksaray, Turkey, 31 August 2022

A microfluidic platform for real-time enumeration and retrieval of low numberof cells

Şahin B., Karayalçın G., Toral T., Şen Doğan B., Özgür E., Zorlu Ö., et al.
Microfluidics 2022, Heidelberg, Germany, 11 July 2022, pp.80 Sustainable Development

An ultrasonic assisted method for fabricating metal layers on thermoplastic substrates for lab-on-a-chip

FARAHANI S., GÜMÜŞTAŞ A., ÜLKÜ M. K., TAMER U., ARIKAN M. A. S., YILDIRIM E.
Microfluidics 2022, Heidelberg, Germany, 11 July 2022, pp.58

DEVELOPMENT OF A MICROFLUIDIC PLATFORM TO MAINTAIN VIABILITY OF MICRO-DISSECTED TUMOR SLICES IN CULTURE

Parsian M., MUTLU P., YILDIRIM E., Ildiz C., ÖZEN C., GÜNDÜZ U.
The Sixth International Symposium on Pharamceutical and Biomedical Sciences, Gaziantep, Turkey, 26 May 2022, pp.105

2D PHASE-FIELD SIMULATION AND EXPERIMENTAL VALIDATION OF DROPLET FORMATION IN A FLOW-FOCUSING JUNCTION

Atik A. C., Yıldırım E., Külah H.
24th International Conference on Miniaturized Systems for Chemistry and Life Sciences, 4 - 09 October 2020, pp.222-223

NUMERICAL SIMULATION AND EXPERIMENTAL ANALYSIS OFINERTIAL CELL FOCUSING IN A CONTRACTION-EXPANSION ARRAY (CEA) MICROCHANNEL

Atik A. C., Yildirim E., Külah H.
24th International Conference on MiniaturizedSystems for Chemistry and Life Sciences, 4 - 09 October 2020

Mikroakışkan sistemlerde immunolipozom destekli patojen bakteri tayini

Eryılmaz M., İlbasmış Tamer S., Tayyarcan E. K., Ekşi Koçak H., Yıldırım E., Boyacı İ. H., et al.
XVI. Ulusal Spektroskopi Kongresi, Turkey, 7 - 08 November 2019

Dielectrophoretic Detection Of Imatinib Resistance In K562 Cells Using A Lab-On-A-Chip System

Demircan Yalçın Y., TORAL T. B., Sukaş S., Yıldırım E., Zorlu Ö., GÜNDÜZ U., et al.
MicroTAS 2019, Basel, Switzerland, 27 - 31 October 2019 identifier

FABRICATION OF ORGAN-ON-A-CHIP SYSTEMS AND BIOPRINTING

YILDIRIM E.
8th BBBB International Conference on Pharmaceutical Sciences, Çeşme, Turkey, 14 - 16 October 2019

CHARACTERIZATION OF EMBEDDED MICROCHANNELS FABRICATED BY SLA

Yıldırım E., Yaman U., Arıkan M. A. S.
4th INTERNATIONAL CONGRESS ON 3D PRINTING (ADDITIVE MANUFACTURING) TECHNOLOGIES AND DIGITAL INDUSTRY, Antalya, Turkey, 11 - 14 April 2019

GENERATION AND CHARACTERIZATION OF HYDROGEL MICRODROPLETS AS BIOINK FOR BIOPRINTING APPLICATIONS

Sucularlı F., Yıldırım E., Arıkan M. A. S.
4th INTERNATIONAL CONGRESS ON 3D PRINTING (ADDITIVE MANUFACTURING) TECHNOLOGIES AND DIGITAL INDUSTRY, Antalya, Turkey, 11 - 14 April 2019, pp.416-419

A combinational approach for determining the channel dimensions and separation wall location in a spiral microchannel

Özkayar G., Sukas S., Töral T. B., YILDIRIM E., Zorlu Ö., KÜLAH H.
Liquid Biopsy for Cancer - Gordon Research Seminar Conference, 4 - 05 August 2018

Enumeration of Escherichia coli based on SERS technique in a passive type microfluidic chip

Doğan Ü., Kasap E. N., Çoğun F., Yıldırım E., Çetin D., Suludere Z., et al.
ISOPS-12 Ankara, Turkey, Ankara, Turkey, 26 - 29 June 2018, pp.99-100

Determination of Electrical Heterogeneities in Cell Lines by Dielectrophoresis Utilizing High Conductivity Buffers

Demircan Yalçın Y., Töral T. B., Sukas S., KÜLAH H., YILDIRIM E., Zorlu Ö.
ICNMM 2018, 10 - 13 June 2018

Fluorescent on-chip imager by using a tunable absorption filter

Arpali Ç., Yıldırım E., Altay Arpali S.
The European Conference on Lasers and Electro-Optics, Munich, Germany, 25 - 29 June 2017, pp.3

Simultaneous Detection of Two Different Bacteria Using QDs and MNPs

Doğan Ü., Kasap E. N., Çoğun F., Yıldırım E., Çetin D., Suludere Z., et al.
10th Aegean Analytical Chemistry Days, Çanakkale, Turkey, 29 September - 02 October 2016, pp.365-0

Chip-Based Immunomagnetic Separation of Human Chorionic Gonadotropin

Ahi E. E., Gümüştaş A., Çiftçi H., Çağlayan M. G., Selbes Y. S., Çoğun F., et al.
10th Aegean Analytical Chemistry Days, Çanakkale, Turkey, 29 September - 02 October 2016, pp.361

Microchip Based Determination of Bacteria by in-Chip Sandwich Immunoassay

Kasap E. N., Çoğun F., Yıldırım E., Doğan Ü., Boyacı İ. H., Çetin D., et al.
10th Aegean Analytical Chemistry Days, Çanakkale, Turkey, 29 September - 02 October 2016, pp.31-0

On-Chip Insulated Micro Well Array for Cell Viability Assays

Parsian M., Atik A. C., Özkan M. D., GÜNDÜZ U., KÜLAH H., Özgür E., et al.
EMBL Conference: Microfluidics 2016, 24 - 26 July 2016

A Novel Cell Sorting Structure to Improve Droplet Based Single Cell Encapsulation

Atik A. C., Özkan M. D., KÜLAH H., Özgür E., YILDIRIM E.
EMBL Conference: Microfluidics 2016, 24 - 26 July 2016

Effect of Preheating on Channel Geometry and Surface Texture in Fabrication of Plastic Microfluidic Chips by Ultrasonic Hot Embossing

ÇOĞUN F., YILDIRIM E.
EMBL Conference: Microfluidics 2016, 24 - 26 July 2016

Rep-Rap 3 Boyutlu Yazıcı Kullanılarak Biyo Yazıcı Uygulaması

Yıldırım B., Pank B. K., Keçeci E., Totuk O., YILDIRIM E.
3B BASKI TEKNOLOJİLERİ ULUSLARARASI SEMPOZYUMU, 5 - 07 May 2016

MaSter: UV-C Sterilizer for Magistral Medication Preparation in Pharmacies

Totuk O. H., YILDIRIM E.
8. Mühendislik ve Teknoloji Sempozyumu, Turkey, 14 - 15 May 2015

Optimization of Hot Embossing Process for Fabrication of Microfluidic Devices

Ziyara A., ÇOĞUN F., Varol C., Totuk O. H., YILDIRIM E.
8. Mühendislik ve Teknoloji Sempozyumu, Turkey, 14 - 15 May 2015

Phaseguides: A Toolbox for Passive Microfluidics

YILDIRIM E., Trietsch S. J., Joore J., Hankemeier T., Vulto P.
EMBL Conference: Microfluidics 2014, 23 - 25 July 2014

PHASEGUIDE ASSISTED LIQUID LAMINATION FOR MAGNETIC BEAD BASED ASSAYS

Phurimsak C., YILDIRIM E., Trietsch S. J., Hankemeier T., Tarn M. D., Pamme N., et al.
17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, 27 - 31 October 2013 identifier

Reconfigurable Microfluidic Transmitarray Unit Cells

Erdil E., Kaan T., Zorlu Ö., Toral T., Yıldırım E., KÜLAH H., et al.
MEMSWAVE 2013, 14th International Symposium on RF-MEMS and RF-Microsystems, Potsdam, Germany, 1 - 03 July 2013

Reconfigurable Microfluidic Transmitarray Unit Cell

Erdil E., Topallı K., Zorlu Ö., Toral T., Yıldırım E., KÜLAH H., et al.
European Conference on Antennas and Propagation (EUCAP) 2013), GÖTEBORG, Sweden, 8 - 12 April 2013

A Reconfigurable Microfluidic Transmitarray Unit Cell

Erdil E., Topalli K., Zorlu Ö., Toral T., YILDIRIM E., KÜLAH H., et al.
7th European Conference on Antennas and Propagation, 8 - 12 April 2013 identifier

A Droplet based Multi-Drug Screening System Controlled with Electrostatic Microvalves

YILDIRIM E., Özgür E., KÜLAH H.
16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, 28 October - 01 November 2012 identifier

Analysis and Testing of a Micromixer for Precision Milled Microchannel Networks

YILDIRIM E.
EMBL Conference: Microfluidics 2012, 25 - 27 July 2012

An electrostatically actuated parylene microvalve for lab on a chip applications

YILDIRIM E., ARIKAN M. A. S., KÜLAH H.
16. International Conference on Solid State Sensors, Actuators and Micro Systems, 5 - 09 July 2011 identifier

Design and Leakage Characterization of a Microvalve for Parylene Based Lab-on-a-Chip Systems

Yıldırım E., Arıkan M. A. S., Külah H.
4. Mühendislik ve Teknoloji Sempozyumu, Ankara, Turkey, 28 - 29 April 2011

An Electrostatic Parylene Microvalve for Lab-on-a-Chip Applications

Yıldırım E., Koyuncuoğlu A., Külah H.
15. Biyomedikal Mühendisliği Ulusal Toplantısı, Antalya, Turkey, 21 - 24 April 2010 identifier

An electrostatic parylene microvalve for controlling in plane flow

YILDIRIM E., Koyuncuoğlu A., KÜLAH H.
13. International Conference on Miniaturized Systems for Chemistry and Life Sciences, 1 - 05 November 2009 identifier

Books & Book Chapters

Litografi

Yıldırım E.
in: Nanoüretim Teknikleri, Fatma Doğan Güzel, Editor, Nobel Yayın Dağıtım, Ankara, pp.145-167, 2023

Lab on a chip: A versatile integration with spectroscopic techniques

Eryılmaz M., Yıldırım E., Tamer U.
in: Handbook on Miniaturization in Analytical Chemistry, Chaudhery Mustansar Hussain, Editor, Elsevier Science, Oxford/Amsterdam , Amsterdam, pp.139-152, 2020

Otomatik Montaj Sistemleri

Yıldırım E.
in: Otomasyon, Üretim Sistemleri ve Bilgisayarla Tümleşik İmalat, Mustafa Yurdakul,Yusuf Tansel İç, Editor, Nobel Yayın Dağıtım, Ankara, pp.472-496, 2016

Grup Teknoloji ve Hücresel İmalat

Yıldırım E.
in: Otomasyon, Üretim Sistemleri ve Bilgisayarla Tümleşik İmalat, Mustafa Yurdakul,Yusuf Tansel İç, Editor, Nobel Yayın Dağıtım, Ankara, pp.497-530, 2016

Otomatik Üretim Hatları

Yıldırım E.
in: Otomasyon, Üretim Sistemleri ve Bilgisayarla Tümleşik İmalat, Mustafa Yurdakul,Yusuf Tansel İç, Editor, Nobel Yayın Dağıtım, Ankara, pp.441-471, 2016

İmalat Sistemlerine Genel Bakış

Yıldırım E.
in: Otomasyon, Üretim Sistemleri ve Bilgisayarla Tümleşik İmalat, Mustafa Yurdakul,Yusuf Tansel İç, Editor, Nobel Yayın Dağıtım, Ankara, pp.353-365, 2016

Tek İstasyonlu İmalat Hücreleri

Yıldırım E.
in: Otomasyon, Üretim Sistemleri ve Bilgisayarla Tümleşik İmalat, Mustafa Yurdakul,Yusuf Tansel İç, Editor, Nobel Yayın Dağıtım, Ankara, pp.366-389, 2016

Elle İşletilen Montaj Hatları

Yıldırım E.
in: Otomasyon, Üretim Sistemleri ve Bilgisayarla Tümleşik İmalat, Mustafa Yurdakul,Yusuf Tansel İç, Editor, Nobel Yayın Dağıtım, Ankara, pp.390-440, 2016

Mikroakışkan Sistemlere Yönelik Gelecek Tahminleri

YEŞİL ÇELİKTAŞ Ö., ÇETİN B., YILDIRIM E.
in: Mikroakışkan Teknolojilerin Temelleri Ve Uygulamaları, Özlem Yeşil Çeliktaş, Editor, Ege Üniversitesi Basımevi, pp.199-205, 2016

Mikroakışkan Sistemlerin Üretimi

ÇETİN B., YILDIRIM E., AKAY Ş.
in: Mikroakışkan Teknolojilerin Temelleri Ve Uygulamaları, ÖZLEM YEŞİL ÇELİKTAŞ, Editor, Ege Üniversitesi Basımevi, pp.27-54, 2016