Publications & Works

Articles Published in Journals That Entered SCI, SSCI and AHCI Indexes

Data stream clustering: a review

ARTIFICIAL INTELLIGENCE REVIEW, vol.54, no.2, pp.1201-1236, 2021 (Journal Indexed in SCI) identifier identifier

HandVR: a hand-gesture-based interface to a video retrieval system

SIGNAL IMAGE AND VIDEO PROCESSING, vol.9, no.7, pp.1717-1726, 2015 (Journal Indexed in SCI) Creative Commons License identifier identifier

Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering

INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, vol.4, no.6, pp.701-721, 2010 (Journal Indexed in SCI) Creative Commons License identifier identifier

Subsequence-based feature map for protein function classification

COMPUTATIONAL BIOLOGY AND CHEMISTRY, vol.32, no.2, pp.122-130, 2008 (Journal Indexed in SCI) Creative Commons License identifier identifier identifier

Almost autonomous training of mixtures of principal component analyzers

PATTERN RECOGNITION LETTERS, vol.25, no.9, pp.1085-1095, 2004 (Journal Indexed in SCI) identifier identifier

Camera auto-calibration using a sequence of 2D images with small rotations

PATTERN RECOGNITION LETTERS, vol.25, no.9, pp.989-997, 2004 (Journal Indexed in SCI) identifier identifier

Vision-based continuous Graffiti (TM)-like text entry system

OPTICAL ENGINEERING, vol.43, no.3, pp.553-558, 2004 (Journal Indexed in SCI) Creative Commons License identifier identifier

A hierarchical representation of form documents for identification and retrieval

International Journal on Document Analysis and Recognition, vol.5, no.1, pp.17-27, 2003 (Journal Indexed in SCI Expanded) identifier

Silhouette-based 3-D model reconstruction from multiple images

IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART B-CYBERNETICS, vol.33, no.4, pp.582-591, 2003 (Journal Indexed in SCI) identifier identifier identifier

Ore-age: a hybrid system for assisting and teaching mining method selection

EXPERT SYSTEMS WITH APPLICATIONS, vol.24, no.3, pp.261-271, 2003 (Journal Indexed in SCI) identifier identifier

Prediction of protein subcellular localization based on primary sequence data

COMPUTER AND INFORMATION SCIENCES - ISCIS 2003, vol.2869, pp.611-618, 2003 (Journal Indexed in SCI) identifier identifier

Texture segmentation using the mixtures of principal component analyzers

COMPUTER AND INFORMATION SCIENCES - ISCIS 2003, vol.2869, pp.505-512, 2003 (Journal Indexed in SCI) identifier identifier

Projection based method for segmentation of human face and its evaluation

PATTERN RECOGNITION LETTERS, vol.23, no.14, pp.1623-1629, 2002 (Journal Indexed in SCI) identifier identifier

Vision-based single-stroke character recognition for wearable computing

IEEE INTELLIGENT SYSTEMS & THEIR APPLICATIONS, vol.16, no.3, pp.33-37, 2001 (Journal Indexed in SCI) Creative Commons License identifier identifier

Matching algorithm based on Godel coding scheme

Proceedings of SPIE - The International Society for Optical Engineering, vol.3974, pp.576-583, 2000 (Journal Indexed in SCI) identifier identifier

Subband domain coding of binary textual images for document archiving

IEEE TRANSACTIONS ON IMAGE PROCESSING, vol.8, no.10, pp.1438-1446, 1999 (Journal Indexed in SCI) Creative Commons License identifier identifier identifier

A matching algorithm based on linear features

PATTERN RECOGNITION LETTERS, vol.19, no.9, pp.857-867, 1998 (Journal Indexed in SCI) identifier identifier

Articles Published in Other Journals

An Image-Based Inexpensive 3D Scanner

International Journal of Image and Graphics, vol.3, no.2, pp.235-263, 2003 (Refereed Journals of Other Institutions) identifier

Computer vision based mouse

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings, vol.4, pp.4178, 2002 (Refereed Journals of Other Institutions) identifier

Refereed Congress / Symposium Publications in Proceedings

Online embedding and clustering of data streams

3rd International Conference on Big Data Research, ICBDR 2019, Cergy-Pontoise, France, 20 - 21 November 2019, pp.142-146 identifier

Comparison of predictive models for forecasting timeseries data

3rd International Conference on Big Data Research, ICBDR 2019, Cergy-Pontoise, France, 20 - 21 November 2019, pp.172-176 Sustainable Development identifier

Forecasting of Product Quality Through Anomaly DetectionMehmet Dinç,

2nd International Conference on Digital Transformation and Smart Systems, Ankara, Turkey, 23 - 25 October 2019

Receptor-Ligand Binding Affinity Prediction via Multi-Channel Deep Chemogenomic Modeling

The International Symposium on Health Informatics and Bioinformatics (HIBIT 2019), İzmir, Turkey, 17 - 18 October 2019

Forecasting of Product Quality Through Anomaly Detection

ECML/PKDD 2019 Workshop on Io Stream for Data Driven Predictive Maintenance, Würzburg, Germany, 16 September 2019

iBioProVis: Interactive Visualization and Analysis of Compound Bioactivity Space

27th Conference on Intellient Systems for Molecular Biology and 18th European Conference on Computational Biology, Basel, Switzerland, 21 - 25 July 2019

CROssBAR: Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning”, Oral presentation

27th Conference on Intelligent Systems for Molecular Biology and 18th European Conference on Computational Biology, Basel, Switzerland, 21 - 25 July 2019

Drug-Target Interaction Prediction with Deep Convolutional Neural Networks Using Compound Images

26th Conference on Intelligent Systems for Molecular Biology, Chicago, United States Of America, 6 - 10 July 2018

Automated Negative Gene Ontology Based Functional Predictions for Proteins with UniGOPred

26th Conference on Intelligent Systems for Molecular Biology, Chicago, United States Of America, 6 - 10 July 2018

Investigation of Multi-task Deep Neural Networks in Automated Protein Function Prediction

ISMB/ECCB 2017: 25th Annual International Conference on Intelligent Systems for Molecular Biology, Prag, Czech Republic, 21 - 25 July 2017

Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature

ISMB/ECCB 2017: 25th Annual International Conference on Intelligent Systems for Molecular Biology, Prag, Czech Republic, 21 - 25 July 2017

Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature

10th The International Symposium on Health Informatics and Bioinformatics (HIBIT 2017), Kalkanlı, Cyprus (Kktc), 28 - 30 June 2017, pp.37

Investigation of Multitask Deep Neural Networks for Protein Function Prediction

10th The International Symposium on Health Informatics and Bioinformatics (HIBIT 2017), Erdemli, Cyprus (Kktc), 28 - 30 June 2017

ECPred: An Automated Enzymatic Function Prediction Tool Based on Combination of Different Classifiers

GLBIO 2017: Great Lakes Bioinformatics Conference, May 15-17, Şikago, United States Of America, 15 - 17 May 2017

EClerize: A Customized Force-Directed Layout Algorithm for Biological Networks with EC Attributes

GLBIO 2017: Great Lakes Bioinformatics Conference, Şikago, United States Of America, 15 - 17 May 2017

UniGOPred: A Large Scale Automated GO Term Annotation System for UniProtKB

GLBIO 2017: Great Lakes Bioinformatics Conference, Şikago, United States Of America, 15 - 17 May 2017

Discriminative Modeling of Cell Signaling as Bayesian Networks

2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO), Granada, Nicaragua, 7 - 09 April 2014, pp.1617 identifier

Genetic variants within endotoxin signaling pathway association with asthma and atopy phenotypes

31st Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Geneva, Switzerland, 16 - 20 June 2012, vol.67, pp.469 identifier

Single nucleotide polymorphisms in the endotoxin signaling pathway and their relationship with in vitro IgE synthesis

31st Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Geneva, Switzerland, 16 - 20 June 2012, vol.67, pp.467-468 identifier

Association of asthma with polymorphisms in the endotoxin signaling pathway

31st Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Geneva, Switzerland, 16 - 20 June 2012, vol.67, pp.469-470 identifier

Genetic variants within the endotoxin signaling pathway and asthma: an association study

30th Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), İstanbul, Turkey, 11 - 15 June 2011, vol.66, pp.60 identifier

Genetic variants within the endotoxin signaling pathway and their effects on in-vitro IgE synthesis

30th Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), İstanbul, Turkey, 11 - 15 June 2011, vol.66, pp.115 identifier

Which Shape Representation Is the Best for Real-Time Hand Interface System?

5th International Symposium on Visual Computing, Nevada, United States Of America, 30 November - 02 December 2009, vol.5875, pp.1-3 identifier

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data

3rd International Workshop on Machine Learning in Systems Biology (MLSB), Ljubljana, Slovenia, 5 - 06 September 2009, vol.8, pp.44-54 identifier

Short Time Series Microarray Data Analysis and Biological Annotation

IEEE 16th Signal Processing and Communications Applications Conference, Aydın, Turkey, 20 - 22 April 2008, pp.533-534 identifier identifier

HP2SLs: a database for subcellular localizations of human proteome

31st Congress of the Federation-of-European-Biochemical-Societies (FEBS), İstanbul, Turkey, 24 - 29 June 2006, vol.273, pp.248 identifier

CAPRIS: a database for cancer gene promoter related motif search

31st Congress of the Federation-of-European-Biochemical-Societies (FEBS), İstanbul, Turkey, 24 - 29 June 2006, vol.273, pp.248 Sustainable Development identifier

A novel model-based method for feature extraction from protein sequences for classification

IEEE 14th Signal Processing and Communications Applications, Antalya, Turkey, 16 - 19 April 2006, pp.129-131 identifier identifier

Prediction of protein subcellular localization based on primary sequence data

IEEE 12th Signal Processing and Communications Applications Conference, Kusadasi, Turkey, 28 - 30 April 2004, pp.118-120 identifier identifier

Texture classification and retrieval using random neural network model

6th Biennial IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI 2004), Nevada, United States Of America, 28 - 30 March 2004, pp.109-113 identifier identifier

Image-based extraction of material reflectance properties of a 3D rigid object

IEEE 12th Signal Processing and Communications Applications Conference, Kusadasi, Turkey, 28 - 30 April 2004, pp.245-248 identifier identifier

Change detection in aerial images

1st Canadian Conference on Computer and Robot Vision, London, Canada, 17 - 19 May 2004, pp.354-360 identifier identifier

Ore-age: An intelligent assisting and tutoring system for mining method selection

Proceedings of the Seventh IASTED International Conference on Artificial Intelligence and Soft Computing, Banff, Canada, 14 - 16 July 2003, vol.7, pp.313-320 identifier

Computer vision based unistroke keyboard system and mouse for the handicapped

4th International Conference on Multimedia and Expo (ICME 2003), Maryland, United States Of America, 6 - 09 July 2003, pp.765-768 Creative Commons License identifier identifier

A character recognizer for Turkish language

7th International Conference on Document Analysis and Recognition (ICDAR 2003), Edinburgh, Saint Helena, 3 - 06 August 2003, pp.1238-1241 identifier identifier

Camera auto-calibration using a sequence of 2D images with small rotations and translations

17th International Symposium on Computer and Information Sciences, Florida, United States Of America, 28 - 30 October 2002, pp.215-219 identifier

Computer vision based unistroke keyboards

17th International Symposium on Computer and Information Sciences, Florida, United States Of America, 28 - 30 October 2002, pp.210-214 identifier

Texture segmentation by using adaptive polyphase subband decomposition

17th International Symposium on Computer and Information Sciences, Florida, United States Of America, 28 - 30 October 2002, pp.81-85 identifier

Appearance reconstruction of three dimensional models from real images

17th International Symposium on Computer and Information Sciences, Florida, United States Of America, 28 - 30 October 2002, pp.76-80 identifier

Reconstruction of three dimensional models from real images

1st International Symposium on 3D Data Processing Visualization and Transmission, Padua, Italy, 19 - 21 June 2002, pp.554-557 identifier identifier

Computer vision based mouse

IEEE International Conference on Acoustics, Speech, and Signal Processing, Florida, United States Of America, 13 - 17 May 2002, pp.4178 identifier

PCA for gender estimation: Which eigenvectors contribute?

16th International Conference on Pattern Recognition (ICPR), QUEBEC CITY, Canada, 11 - 15 August 2002, pp.363-366 identifier identifier

Head modeling with camera auto-calibration and deformation

International Fall Workshop on Vision Modeling and Visualization 2000, Erlangen, Germany, 20 - 22 November 2002, pp.3-11 identifier

An automated differential blood count system

23rd Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society, İstanbul, Turkey, 25 - 28 October 2001, vol.23, pp.2583-2586 identifier identifier

Feature extraction and classification of blood cells for an automated differential blood count system

International Joint Conference on Neural Networks (IJCNN 01), Washington, Kiribati, 15 - 19 July 2001, pp.2461-2466 identifier identifier

Multi-baseline stereo correction for silhouette-based 3D model reconstruction from multiple images

Conference on 3-Dimensional Image Capture and Applications IV, San-Jose, Costa Rica, 24 - 25 January 2001, vol.4298, pp.143-154 identifier identifier

Segmentation of human face using gradient-based approach

Conference on Machine Vision Applications in Industrial Inspection IX, San-Jose, Costa Rica, 22 - 23 January 2001, vol.4301, pp.52-63 identifier identifier

Automated contour detection in blood cell images by an efficient snake algorithm

Proceedings of the 3th World Congress of Nonlinear Analysts (WCNA 2000), Catania, Italy, 19 - 26 July 2000, vol.47, pp.5839-5847 identifier identifier

A matching algorithm based on Godel coding scheme

Conference on Image and Video Communications and Processing 2000, San-Jose, Costa Rica, 25 - 28 January 2000, vol.3974, pp.576-583 identifier

A hierarchical representation of form documents for identification and retrieval

7th Annual Document Recognition and Retrieval Conference, San-Jose, Costa Rica, 26 - 27 January 2000, vol.3967, pp.128-139 identifier

Hierarchical representation of form documents for identification and retrieval

Proceedings of the 2000 Document Recognition and Retrieval VII, San-Jose, Costa Rica, 26 - 27 January 2000, vol.3967, pp.128-139 identifier

Texture based image retrieval by combining multiple tools

International Conference on Imaging Science, Systems, and Technology (CISST 2000), Nevada, United States Of America, 26 - 29 June 2000, pp.659-664 identifier

Texture extraction from photographs and rendering with dynamic texture mapping

10th International Conference on Image Analysis and Processing, ICIAP 1999, Venice, Italy, 27 - 29 September 1999, pp.1055-1058 identifier

An SGML based viewer for form documents

5th International Conference on Document Analysis and Recognition, ICDAR 1999, Bangalore, India, 20 - 22 September 1999, pp.201-204 identifier

Learning by optimization in random neural networks

13th International Symposium on Computer and Information Sciences (ISCIS 98), BELEK ANTALYA, Turkey, 26 - 28 October 1998, vol.53, pp.143-148 identifier

A heuristic algorithm for hierarchical representation of form documents

14th International Conference on Pattern Recognition, Brisbane, Australia, 16 - 20 August 1998, pp.929-931 identifier

Estimation of rotation between two frames of a scene

Visual Information Processing VII, Florida, United States Of America, 13 - 14 April 1998, vol.3387, pp.252-260 identifier identifier

Unsupervised texture based image segmentation by simulated annealing using Markov random field and Potts models

14th International Conference on Pattern Recognition, Brisbane, Australia, 16 - 20 August 1998, pp.820-822 identifier

An automated blood cell analysis and classification system

13th International Symposium on Computer and Information Sciences (ISCIS 98), BELEK ANTALYA, Turkey, 26 - 28 October 1998, vol.53, pp.222-227 identifier

Repulsive attractive network for baseline extraction on document images

1997 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 97), Munich, Germany, 21 - 24 April 1997, pp.3181-3184 identifier identifier

Unsupervised segmentation of gray level Markov model textures with hierarchical self organizing maps

13th International Conference on Pattern Recognition, ICPR 1996, Vienna, Austria, 25 - 29 August 1996, vol.4, pp.90-94 identifier

TEXTURE GENERATION WITH THE RANDOM NEURAL NETWORK MODEL

INTERNATIONAL CONF ON ARTIFICIAL NEURAL NETWORKS ( ICANN-91 ), Espoo, Finland, 24 - 28 June 1991, pp.111-116 identifier

Books & Book Chapters

Forecasting of Product Quality Through Anomaly Detection

in: Machine Learning and Knowledge Discovery in Databases, Cellier P.,Driessens K., Editor, Springer-Verlag , Basel, pp.357-366, 2020