Implicit motif distribution based hybrid computational kernel for sequence classification


Creative Commons License

Atalay V. , Cetin-Atalay R.

BIOINFORMATICS, cilt.21, ss.1429-1436, 2005 (SCI İndekslerine Giren Dergi) identifier identifier identifier

  • Cilt numarası: 21 Konu: 8
  • Basım Tarihi: 2005
  • Doi Numarası: 10.1093/bioinformatics/bti212
  • Dergi Adı: BIOINFORMATICS
  • Sayfa Sayıları: ss.1429-1436

Özet

Motivation: We designed a general computational kernel for classification problems that require specific motif extraction and search from sequences. Instead of searching for explicit motifs, our approach finds the distribution of implicit motifs and uses as a feature for classification. Implicit motif distribution approach may be used as modus operandi for bioinformatics problems that require specific motif extraction and search, which is otherwise computationally prohibitive.