Yayınlar & Eserler

Yayın Ağı

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Crowdsourced mapping of unexplored target space of kinase inhibitors

Cichonska A., Ravikumar B., Allaway R. J., Wan F., Park S., Isayev O., et al.
NATURE COMMUNICATIONS , cilt.12, sa.1, 2021 (SCI-Expanded) identifier identifier identifier

MDeePred: Novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery

Rifaioglu A., Atalay R. C., KAHRAMAN D. C., DOĞAN T., Martin M., ATALAY M. V.
Bioinformatics , cilt.37, sa.5, ss.693-704, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Design, Synthesis and In Vitro Cytotoxic Activity of New 6,9-Disubstituted Purine Analogues

Kucukdumlu A., TUNÇBİLEK M., GÜVEN E. B., ATALAY R.
ACTA CHIMICA SLOVENICA , cilt.67, sa.1, ss.70-82, 2020 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier

A visual object tracking benchmark for cell motility in time-lapse imaging

Demir H. S., Cetin A. E., ATALAY R.
SIGNAL IMAGE AND VIDEO PROCESSING , cilt.13, sa.6, ss.1063-1070, 2019 (SCI-Expanded) identifier identifier

Synthesis and Cytotoxicity Studies on Novel Piperazinylacetamides

Bobtaina E., GÜRDAL HAKGÖR E. E., Durmaz I., Atalay R. C., YARIM YÜKSEL M.
LETTERS IN DRUG DESIGN & DISCOVERY , cilt.16, sa.1, ss.45-51, 2019 (SCI-Expanded) identifier identifier

Synthesis and cellular bioactivities of novel isoxazole derivatives incorporating an arylpiperazine moiety as anticancer agents.

ÇALIŞKAN B., Sinoplu E., Ibis K., Guzelcan E. A., Atalay R. C., BANOĞLU E.
Journal of enzyme inhibition and medicinal chemistry , cilt.33, sa.1, ss.1352-1361, 2018 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Development of a novel zebrafish xenograft model in ache mutants using liver cancer cell lines

Avci M. E., Keskus A. G., Targen S., Isilak M. E., Ozturk M., Atalay R. C., et al.
SCIENTIFIC REPORTS , cilt.8, 2018 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Synthesis and biological evaluation of novel pyrazolic chalcone derivatives as novel hepatocellular carcinoma therapeutics.

Hawash M. M. A., Kahraman D. C., Eren F., Atalay R. C., BAYTAŞ S.
European journal of medicinal chemistry , cilt.129, ss.12-26, 2017 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

Synthesis of Some Substituted 6-Phenyl Purine Analogues and Their Biological Evaluation as Cytotoxic Agents

Kucukdumlu A., Tuncbilek M., Guven E. B., Atalay R.
ACTA CHIMICA SLOVENICA , cilt.64, sa.3, ss.621-632, 2017 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

Bioactivities of novel boehmeriasin derivatives in liver cancer cells

Guzelcan E. A., Baumann M., Baxendale I., ATALAY R.
EUROPEAN JOURNAL OF CANCER , cilt.61, 2016 (SCI-Expanded) Sürdürülebilir Kalkınma identifier

Sequential treatment of HCC cells with PI3K/Akt/mTOR pathway inhibitors prior to sorafenib attenuates cancer stem cell population

Kahraman D. C., Kahraman T., ATALAY R.
EUROPEAN JOURNAL OF CANCER , cilt.61, 2016 (SCI-Expanded) Sürdürülebilir Kalkınma identifier

Synthesis of novel diflunisal hydrazide hydrazones as anti-hepatitis C virus agents and hepatocellular carcinoma inhibitors

ŞENKARDEŞ S., Kaushik-Basu N., Durmaz I., Manvar D., Basu A., ATALAY R., et al.
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY , cilt.108, ss.301-308, 2016 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Keskin N., Deniz E., Eryilmaz J., Un M., Batur T., Ersahin T., et al.
MOLECULAR AND CELLULAR BIOLOGY , cilt.35, sa.10, ss.1741-1753, 2015 (SCI-Expanded) identifier identifier identifier

Prediction of enzyme classes in a hierarchical approach by using SPMap

Yaman A., Atalay V., Atalay R.
NEW BIOTECHNOLOGY , cilt.27, 2010 (SCI-Expanded) identifier

Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering

Carkacioglu L., Atalay R. C., KONU KARAKAYALI Ö., Atalay V., CAN T.
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS , cilt.4, sa.6, ss.701-721, 2010 (SCI-Expanded) Creative Commons License identifier identifier

Prediction of protein subcellular localization based on primary sequence data

Ozarar M., Atalay V., Atalay R.
COMPUTER AND INFORMATION SCIENCES - ISCIS 2003 , cilt.2869, ss.611-618, 2003 (SCI-Expanded) identifier identifier

Diğer Dergilerde Yayınlanan Makaleler

Multi-task Deep Neural Networks in Protein Function Prediction

RİFAİOĞLU A. S., doğan t., Martin M. J., ATALAY R., ATALAY M. V.
arXiv , 2017 (Hakemsiz Dergi)

Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

Synthesis of New Vicinal Diaryl Five-Membered Heterocyclic Compounds with Potential Anticancer Activity

TURANLİ S., LENGERLİ D., ÇALIŞKAN B., AKHAN GÜZELCAN E., NALBAT E., ATALAY R., et al.
8th International Drug Chemistry Conference, 27 Şubat - 01 Mart 2020

A NEW THIADIAZINE DERIVATIVE INDUCES OXIDATIVE STRESS DEPENDENT CELL DEATH IN HEPATOCELLULAR CARCINOMA STEM CELLS

KAHRAMAN D. C., GÜVEN E. B., Aytac P., TOZKOPARAN KÖPRÜCÜ B., ATALAY R.
Annual Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD) / Liver Meeting, Massachusetts, Amerika Birleşik Devletleri, 8 - 12 Kasım 2019, cilt.70 identifier

iBioProVis: Interactive Visualization and Analysis of Compound Bioactivity Space

Dönmez A., RİFAİOĞLU A. S., ACAR A. C., DOĞAN T., Martin M. J., ATALAY R., et al.
27th Conference on Intellient Systems for Molecular Biology and 18th European Conference on Computational Biology, Basel, İsviçre, 21 - 25 Temmuz 2019

A new thiadiazine derivative induces oxidative stress dependent JNK pathway activation and cell death in hepatocellular carcinoma

KAHRAMAN D. C., GÜVEN E. B., TOZKOPARAN KÖPRÜCÜ B., ATALAY R.
Annual Meeting of the American-Association-for-Cancer-Research (AACR), Georgia, Amerika Birleşik Devletleri, 29 Mart - 03 Nisan 2019, cilt.79 identifier

Drug-Target Interaction Prediction with Deep Convolutional Neural Networks Using Compound Images

RİFAİOĞLU A. S., ATALAY M. V., Martin M. J., ATALAY R., Doğan T.
26th Conference on Intelligent Systems for Molecular Biology, Chicago, Amerika Birleşik Devletleri, 6 - 10 Temmuz 2018

Automated Negative Gene Ontology Based Functional Predictions for Proteins with UniGOPred

Doğan T., RİFAİOĞLU A. S., Saidi R., Martin M. J., ATALAY M. V., ATALAY R.
26th Conference on Intelligent Systems for Molecular Biology, Chicago, Amerika Birleşik Devletleri, 6 - 10 Temmuz 2018

SYNTHESIS AND ANTIPROLIFERATIVE EVALUATION OF NOVEL ISOXAZOLE-PIPERAZINE HYBRIDS

ÇALIŞKAN B., Sinoplu E., İbiş K., AKHAN GÜZELCAN E., ATALAY R., BANOĞLU E.
RICT 2018, 4 - 06 Temmuz 2018

SYNTHESIS, CYTOTOXICITY AND STRUCTURE-ACTIVITYRELATIONSHIPS OF NOVEL ISOXAZOLE DERIVATIVES ASANTICANCER AGENTS

İbiş K., ÇALIŞKAN B., AKHAN GÜZELCAN E., Sinoplu E., ATALAY R., BANOĞLU E.
RICT 2018, 4 - 06 Temmuz 2018

Differential alteration of IL-8 in liver cancer stem cell enrichment in response to PI3K/Akt/mTOR inhibitors and sorafenib

Kahraman D. C., Kahraman T., ATALAY R.
American Association for Cancer Research Annual Meeting 2018, Chicago, Amerika Birleşik Devletleri, 12 - 18 Nisan 2018, cilt.78, ss.3937 Sürdürülebilir Kalkınma

Diet affects gut microbiota and modulates hospitalization risk differentially in an international cirrhosis cohort

Bajaj J. S., İDİLMAN R., Mabudian L., Hood M., Fagan A., Turan D., et al.
International Liver Congress (ILC), Paris, Fransa, 11 - 15 Nisan 2018, cilt.68 identifier

Erken evre meme kanserinde Prosigna Testinin Klinik Karara Yansımaları-Tek Merkezli Prospektif Kohort Çalışması

ESİN E., ÇAKMAK ÖKSÜZOĞLU Ö. B., Markoç F., Bilgetekin İ., DEMİRCİ U., ATALAY R.
UKK 2018, Türkiye, 21 - 25 Mart 2018 Sürdürülebilir Kalkınma

Classification of Hematoxylin and Eosin Images Using Local Binary Patterns and 1-D SIFT Algorithm†

OGUZ O., ÇETİN A. E., ATALAY R.
International Workshop on Computational Intelligence for Multimedia Understanding (IWCIM), KOS, Yunanistan, 02 Eylül 2017, cilt.2, ss.94-97

Abstract LB-A08: Differential alteration of IL-8 in response to Sorafenib and PI3K/Akt/mTOR inhibitors in liver cancer cells and in liver cancer stem cells

Kahraman D. C., ATALAY R.
AACR-NCI-EORTC International Conference, Philadelphia, 26 - 30 Ekim 2017 Sürdürülebilir Kalkınma

HEPATOCELLULAR CARCİNOMA TERAPEUTICS: SYNTHESIS AND BIOLOGICAL EVALUATION INDOLE-3-CARBOXAMIDES

Kılıç E. K., Kahraman D. C., ATALAY R., BAYTAŞ S.
2nd International Gazi Pharma Symposium, 11 - 13 Ekim 2017

ANTICANCER EFFECTS OF NEW INDOLE –PYRAZOLE AND ONDOLE-OSOXAZOLE HYBRIDS DESIGN, SYNTHESIS AND EVALUATION OF ACTIVITY

Hawash M. M., Kahraman D. C., ATALAY R., BAYTAŞ S.
2nd International Gazi Pharma Symposium, 11 - 13 Ekim 2017

Synthesis and In Vitro Anticancer Activity of Novel 6,8,9-Trisubstituted Purine Analogs

POLAT M. F., TUNÇBİLEK M., DURMAZ İ., ATALAY R.
3 rd International Multidisciplinary Symposium on Drug Research and Development - DRD 2017, Erzurum, Türkiye, 5 - 07 Ekim 2017

Induction of Apoptosis in Hepatocellular Carcinoma Cell Lines by Novel Indolylacrylamide Derivatives: Synthesis and Biological Evaluation

Hawash M., Kahraman D. C., ATALAY R., BAYTAŞ S.
26th ISHC Congress on Heterocyclic Chemistry, 3 - 08 Eylül 2017

Gene mutations involved in drug resistance in liver cancer cells using a new rna-seq data analysis workflow

Guzelcan E. A., Shojaei M., ACAR A. F., ATALAY R.
42nd European-Society-for-Medical-Oncology Congress (ESMO), Madrid, İspanya, 8 - 12 Eylül 2017, cilt.28 Sürdürülebilir Kalkınma identifier

Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature

DALKIRAN A., Doğan T., RİFAİOĞLU A. S., ATALAY M. V., Martin M. J., ATALAY R.
ISMB/ECCB 2017: 25th Annual International Conference on Intelligent Systems for Molecular Biology, Prag, Çek Cumhuriyeti, 21 - 25 Temmuz 2017

Investigation of Multi-task Deep Neural Networks in Automated Protein Function Prediction

RİFAİOĞLU A. S., Martin M. J., ATALAY R., ATALAY M. V., Doğan T.
ISMB/ECCB 2017: 25th Annual International Conference on Intelligent Systems for Molecular Biology, Prag, Çek Cumhuriyeti, 21 - 25 Temmuz 2017

Investigation of Multitask Deep Neural Networks for Protein Function Prediction

RİFAİOĞLU A. S., Martin M. J., ATALAY R., ATALAY M. V., Doğan T.
10th The International Symposium on Health Informatics and Bioinformatics (HIBIT 2017), Erdemli, Kıbrıs (Kktc), 28 - 30 Haziran 2017

Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature

DALKIRAN A., RİFAİOĞLU A. S., Doğan T., ATALAY M. V., Martin M. J., ATALAY R.
10th The International Symposium on Health Informatics and Bioinformatics (HIBIT 2017), Kalkanlı, Kıbrıs (Kktc), 28 - 30 Haziran 2017, ss.37

Identification of Gene Mutations Involved in Drug Resistance in Liver Cancer Using Rna-Seq Data Analysis

Shojeai M., Akhan E., ACAR A. C., ATALAY R.
The International Symposium on Health Informatics and Bioinformatics, (HIBIT), 28 - 30 Haziran 2017 Sürdürülebilir Kalkınma

Network-Based Discovery of Drug Treatments in Hepatocellular Carcinoma

FAYETORBAY R., ATALAY R., TUNÇBAĞ N.
HIBIT 2017, 28 - 30 Haziran 2017

Synthesis, Anticancer Activity and Docking Studies of New Phenylaminopyrimidine Derivatives

DEMİRCİ A., DURMAZ İ., ATALAY R., KÜÇÜKGÜZEL İ.
10th Joint Meeting on Medicinal Chemistry, 25 - 28 Haziran 2017

Cancer Drug Discovery: Targeting PI3K/AKT/mTOR Cell Survival Pathway

ATALAY R.
European Bioinformatics Institute (EMBL-EBI) - Shared Facilities, Cambridge, Kanada, 13 Haziran 2017 Sürdürülebilir Kalkınma

ECPred: An Automated Enzymatic Function Prediction Tool Based on Combination of Different Classifiers

DALKIRAN A., RİFAİOĞLU A. S., Doğan T., ATALAY M. V., Martin M. J., ATALAY R.
GLBIO 2017: Great Lakes Bioinformatics Conference, May 15-17, Şikago, Amerika Birleşik Devletleri, 15 - 17 Mayıs 2017

EClerize: A Customized Force-Directed Layout Algorithm for Biological Networks with EC Attributes

Danacı H. F., ATALAY R., ATALAY M. V.
GLBIO 2017: Great Lakes Bioinformatics Conference, Şikago, Amerika Birleşik Devletleri, 15 - 17 Mayıs 2017

UniGOPred: A Large Scale Automated GO Term Annotation System for UniProtKB

RİFAİOĞLU A. S., Doğan T., SARAÇ Ö. S., Saidi R., ATALAY M. V., Martin M. J., et al.
GLBIO 2017: Great Lakes Bioinformatics Conference, Şikago, Amerika Birleşik Devletleri, 15 - 17 Mayıs 2017

Dielectrophoretic Spectra of CD133+/EpCAM+ HUH7 Cancer Stem Cells and HUH7 Cancer Cells

Çağlayan Z., Demircan Yalçın Y., Özkayar G., Kahraman D. C., Atalay R., Özgür E., et al.
Dielectrophoresis 2016, Massachusetts, Amerika Birleşik Devletleri, 13 - 15 Temmuz 2016, ss.1-4 Sürdürülebilir Kalkınma

Bioactivities of novel boehmeriasin derivatives in liver cancer cells

Akhan Guzelcan E., Bauman M., Baxendale I., ATALAY R.
EACR 27, 1 - 04 Temmuz 2016, cilt.61, ss.133 Sürdürülebilir Kalkınma

Sequential treatment of HCC cells with PI3K Akt mTOR pathway inhibitors prior to sorafenib attenuates cancer stem cell population

Kahraman D. C., Kahraman T., ATALAY R.
EACR 27, 1 - 04 Temmuz 2016, cilt.61, ss.77 Sürdürülebilir Kalkınma

Mixture of Learners for Cancer Stem Cell Detection Using CD13 and H&E Stained Images

OĞUZ O., Akbas C. E., Mallah M., TAŞDEMİR K., Guzelcan E. A., Muenzenmayer C., et al.
Conference on Medical Imaging - Digital Pathology, California, Amerika Birleşik Devletleri, 2 - 03 Mart 2016, cilt.9791 Creative Commons License Sürdürülebilir Kalkınma identifier identifier

DETECTION OF CANCER STEM CELLS IN MICROSCOPIC IMAGES BY USING REGION COVARIANCE AND CODIFFERENCE METHOD

Oguz O., Muenzenmayer C., Wittenberg T., ÜNER A., ÇETİN A. E., Atalay R. C.
International Workshop on Computational Intelligence for Multimedia Understanding (IWCIM), PRAGUE, Çek Cumhuriyeti, 29 - 30 Ekim 2015 Sürdürülebilir Kalkınma identifier

MULTI-RESOLUTION SUPER-PIXELS AND THEIR APPLICATIONS ON FLUORESCENT MESENCHYMAL STEM CELLS IMAGES USING 1-D SIFT MERGING

Yorulmaz O., Oguz O., Akhan E., TUNCEL D., ATALAY R., ÇETİN A. E.
IEEE International Conference on Image Processing (ICIP), Quebec City, Kanada, 27 - 30 Eylül 2015, ss.2495-2499 identifier

Computational drug target prediction and validation in PI3K AKT pathway

Dogan T., Ersahin T., Rifaioglu A., Diago P., Nightingale A., Martin M. J., et al.
ISMB/ECCB 2015 Dublin, Dublin, İrlanda, 10 - 14 Temmuz 2015

UniGOPred and ECPred Automated Function Prediction Tools Based on A Combination of Different Classifiers

Rifaioglu A., Dogan T., SARAÇ Ö. S., ATALAY M. V., Martin M., ATALAY R.
ISMB Automated FunctionPrediction-SIG, 11 Temmuz 2015

Synergistic antitumor activity of sorafenib and Akt Inhibitors

Tulin E., Durmaz I., ATALAY R.
EACR-AACR-SIC 2015, 20 - 23 Haziran 2015

Cardiac Glycosides induce cell death in drug resistant PTEN 470 de cient liver cancer cells

Durmaz I., Ebru Bilget G., Ersahin T., ÖZTÜRK M., ÇALIŞ İ., ATALAY R.
EACR-AACR-SIC 2015, 20 - 23 Haziran 2015 Sürdürülebilir Kalkınma

Wavelet Merged Multi-resolution Super-pixels and Their Applications on Fluorescent MSC Images

Yorulmaz O., Oguz O., Akhan E., TUNCEL D., ATALAY R., ÇETİN A. E.
23nd Signal Processing and Communications Applications Conference (SIU), Malatya, Türkiye, 16 - 19 Mayıs 2015, ss.1901-1904 identifier

P0449 Non steroidal anti inflammatory drugs in liver fibrosis

Akhan E., Oğuz O., ÇETİN A. E., ATALAY R.
EASL, 1 - 03 Nisan 2015, cilt.62, ss.481

Genetic variants within endotoxin signaling pathway association with asthma and atopy phenotypes

ŞAHİNER Ü. M., YAVUZ S., Buyuktiryaki B., BİRBEN E., Topaloglu E., TUNCER A., et al.
31st Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Geneva, İsviçre, 16 - 20 Haziran 2012, cilt.67, ss.469 identifier

Association of asthma with polymorphisms in the endotoxin signaling pathway

ŞAHİNER Ü. M., YAVUZ S., Buyuktiryaki B., BİRBEN E., Topaloglu E., TUNCER A., et al.
31st Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Geneva, İsviçre, 16 - 20 Haziran 2012, cilt.67, ss.469-470 identifier

Single nucleotide polymorphisms in the endotoxin signaling pathway and their relationship with in vitro IgE synthesis

ŞAHİNER Ü. M., YAVUZ S., Buyuktiryaki B., BİRBEN E., Topaloglu E., Yaman A., et al.
31st Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Geneva, İsviçre, 16 - 20 Haziran 2012, cilt.67, ss.467-468 identifier

Genetic variants within the endotoxin signaling pathway and their effects on in-vitro IgE synthesis

ŞAHİNER Ü. M., YAVUZ S., Buyuktiryaki B., BİRBEN E., Topaloglu E., Yaman A., et al.
30th Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), İstanbul, Türkiye, 11 - 15 Haziran 2011, cilt.66, ss.115 identifier

Genetic variants within the endotoxin signaling pathway and asthma: an association study

ŞAHİNER Ü. M., YAVUZ S., Buyuktiryaki B., BİRBEN E., Topaloglu E., TUNCER A., et al.
30th Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), İstanbul, Türkiye, 11 - 15 Haziran 2011, cilt.66, ss.60 identifier

Prediction of protein subcellular localization based on primary sequence data

Ozarar M., Atalay V., Atalay R.
IEEE 12th Signal Processing and Communications Applications Conference, Kusadasi, Türkiye, 28 - 30 Nisan 2004, ss.118-120 identifier identifier

Kitap & Kitap Bölümleri

Chapter 5 - Cardiac Glycosides and Oxidative Stress in Liver Cancer

ATALAY R., Durmaz i.
The Liver, Vinood B. Patel, Editör, Academic Press , Londrina, ss.55-61, 2019

Molecular Biology of Liver Cancer

Tulin E., ÖZTÜRK M., ATALAY R.
Reviews in Cell Biology and Molecular Medicine, Robert A. Meyers, Editör, John Wiley and Sons, Inc., ss.206-243, 2015

Metrikler

Yayın

75

Atıf (WoS)

198

H-İndeks (WoS)

7

Atıf (Scopus)

143

H-İndeks (Scopus)

6

Proje

14

Tez Danışmanlığı

11

Açık Erişim

9
BM Sürdürülebilir Kalkınma Amaçları