Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Electrochemical detection of Oxaliplatin induced DNA damage in G-quadruplex structures

Osmanoğulları S. C., FOROUGH M., PERSİL ÇETİNKOL Ö., UDUM Y., Toppare L.
ANALYTICAL BIOCHEMISTRY , vol.671, 2023 (SCI-Expanded) identifier identifier identifier

Coumarin 6H-fused fluorescent probe for highly sensitive detection of coralyne using oligonucleotide-modified silver nanoparticles.

Usta H. M., Forough M., Persil Çetinkol Ö.
Analytical and bioanalytical chemistry , vol.414, no.24, pp.7299-7313, 2022 (SCI-Expanded) identifier identifier identifier

A CpG island promoter drives the CXXC5 gene expression

Yasar P., Kars G., Yavuz K., Ayaz G., Oguztuzun C., Bilgen E., et al.
SCIENTIFIC REPORTS , vol.11, no.1, 2021 (SCI-Expanded) identifier identifier identifier

Highly-sensitive and fast detection of human telomeric G-Quadruplex DNA based on a hemin-conjugated fluorescent metal-organic framework platform

Javan Kouzegaran V., Farhadi K., Forough M., Bahram M., Persil Çetinkol Ö.
Biosensors and Bioelectronics , vol.178, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

Construction of amperometric biosensor modified with conducting polymer/carbon dots for the analysis of catechol

Yasa M., Deniz A., Forough M., YILDIRIM E., PERSİL ÇETİNKOL Ö., Udum Y. A., et al.
Journal of Polymer Science , vol.58, no.23, pp.3336-3348, 2020 (SCI-Expanded) identifier identifier

Doxorubicin exhibits strong and selective association with VEGF Pu22 G-quadruplex

Bilgen E., Persil Çetinkol Ö.
Biochimica et Biophysica Acta - General Subjects , vol.1864, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Novel fluorescent azacyanine compounds: Improved synthesis and optical properties

Doğan K., Gülkaya A., Forough M., Persil Ç.
ACS Omega , vol.5, no.36, pp.22874-22882, 2020 (SCI-Expanded) identifier identifier identifier

A conjugated gold nanoparticle-azacyanine off-on-off fluorescence probe for sensitive and selective detection of G-quadruplexes

Bilgen E., Forough M., PERSİL ÇETİNKOL Ö.
Talanta , vol.217, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Azacyanines as novel topoisomerase II alpha inhibitors

Guloglu S., Kirmaci F. N., PERSİL ÇETİNKOL Ö., Forough M., Gulkaya A.
Letters in Drug Design and Discovery , vol.17, no.5, pp.664-669, 2020 (SCI-Expanded) Sustainable Development identifier identifier

A DNA-free colorimetric probe based on citrate-capped silver nanoparticles for sensitive and rapid detection of coralyne

Usta H. M., Forough M., Cetinkol Ö.
Sensors and Actuators, B: Chemical , vol.298, 2019 (SCI-Expanded) identifier identifier

Targeting human telomeric DNA with azacyanines

Kucukakdag Dogu A., Persil Çetinkol Ö.
TURKISH JOURNAL OF CHEMISTRY , vol.43, pp.1040-1051, 2019 (SCI-Expanded) Sustainable Development identifier identifier

Selective High Binding Affinity of Azacyanines to polyd(A) center dot polyd(T) center dot polyd(T) Triplex: The Effect of Chain Length and Branching on Stabilization, Selectivity and Affinity

Tutuncu S., Guloglu S., Kucukakdag A., Persil Çetinkol Ö.
CHEMISTRYSELECT , vol.3, no.45, pp.12878-12887, 2018 (SCI-Expanded) identifier identifier

How Alkyl Chain Length of Alcohols Affects Lignin Fractionation and Ionic Liquid Recycle During Lignocellulose Pretreatment

SATHITSUKSANOH N., Sawant M., TRUONG Q., Tan J., Canlas C. G., Sun N., et al.
BIOENERGY RESEARCH , vol.8, no.3, pp.973-981, 2015 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier

Structural and Chemical Characterization of Hardwood from Tree Species with Applications as Bioenergy Feedstocks

PERSİL ÇETİNKOL Ö., SMITHMORITZ A., CHENG G., LAO J., GEORGE A., HONG K., et al.
PLOS ONE , vol.7, no.12, 2012 (SCI-Expanded) Creative Commons License identifier identifier identifier

Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification

EUDES A., GEORGE A., MUKERJEE P., KIM J., POLLET B., BENKE P., et al.
PLANT BIOTECHNOLOGY JOURNAL , vol.10, no.5, pp.609-620, 2012 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

The impact of ionic liquid pretreatment on the chemistry and enzymatic digestibility of Pinus radiata compression wood

TORR K., LOVE K., PERSİL ÇETİNKOL Ö., DONALDSON L., GEORGE A., HOLMES B., et al.
GREEN CHEMISTRY , vol.14, no.3, pp.778-787, 2012 (SCI-Expanded) identifier identifier

A facile method for the recovery of ionic liquid and lignin from biomass pretreatment

DIBBLE D., LI C., LAN S., GEORGE A., CHENG A., PERSİL ÇETİNKOL Ö., et al.
GREEN CHEMISTRY , vol.13, no.11, pp.3255-3264, 2011 (SCI-Expanded) Sustainable Development identifier identifier

Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A center dot A base pairing and a putative structure of the coralyne-induced homo-adenine duplex

Joung I. S., Cetinkol O. P., HUD N. V., Cheatham T. E.
NUCLEIC ACIDS RESEARCH , vol.37, no.22, pp.7715-7727, 2009 (SCI-Expanded) Creative Commons License identifier identifier identifier

Molecular recognition of poly(A) by small ligands: an alternative method of analysis reveals nanomolar, cooperative and shape-selective binding

Cetinkol O. P., Hud N. V.
NUCLEIC ACIDS RESEARCH , vol.37, no.2, pp.611-621, 2009 (SCI-Expanded) Creative Commons License identifier identifier identifier

Submicromolar, selective G-quadruplex ligands from one pot: Thermodynamic and structural studies of human telomeric DNA binding by azacyanines

Cetinkol O. P., ENGELHART A. E., Nanjunda R. K., Wilson W. D., HUD N. V.
CHEMBIOCHEM , vol.9, no.12, pp.1889-1892, 2008 (SCI-Expanded) identifier identifier identifier

Harnessing DNA intercalation

Persil O., HUD N. V.
TRENDS IN BIOTECHNOLOGY , vol.25, no.10, pp.433-436, 2007 (SCI-Expanded) identifier identifier

Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding

Persil O., SANTAI C., JAIN S., HUD N.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY , vol.126, no.28, pp.8644-8645, 2004 (SCI-Expanded) identifier identifier identifier

Na12Ge17: A compound with the zintl anions [Ge-4](4-) and [Ge-9](4-) - Synthesis, crystal structure, and Raman spectrum

CARRILLO-CABRERA W., GIL R., SOMER M., Persil O., VON SCHNERING H.
ZEITSCHRIFT FUR ANORGANISCHE UND ALLGEMEINE CHEMIE , vol.629, no.4, pp.601-608, 2003 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

Understanding the impact of ionic liquid pretreatment on eucalyptus

PERSİL ÇETİNKOL Ö., DIBBLE D., CHENG G., KENT M., KNIERIM B., AUER M., et al.
Biofuels , vol.1, pp.33-46, 2010 (Scopus)

Refereed Congress / Symposium Publications in Proceedings

DNA Metilasyonunun DNA Yapısı ve DNA-Doksorubisin Etkileşimleri Üzerindeki Etkileri

ÇAVDAR G., PERSİL ÇETİNKOL Ö.
Uluslararası Katılımlı 20. Biyoteknoloji Kongresi, Turkey, 10 - 12 October 2019

Benzimidazol Türevi Azasiyaninlerin Seçiciliği

TUTUNCU S., KUCUKAKDAG A., GULOGLU S., PERSİL ÇETİNKOL Ö.
Uluslararası Katılımlı 6. İlaç Kimyası: İlaç Etkin MaddesiTasarımı, Sentezi, Üretimi ve StandardizasyonuKongresi, 22 - 25 March 2018

G Dörtlü Sarmal Yapısına Sahip Telomerik Dna Dizinleri ile Azasiyaninlerin Etkileşimleri

PERSİL ÇETİNKOL Ö.
4. İlaç Kimyası Kongresi: İlaç Etkin Maddesi Tasarımı, Sentezi, Üretimi ve Standardizasyonu KOngresi, Turkey, 17 - 20 March 2016

Structural characterization of Eucalyptus species

PERSİL ÇETİNKOL Ö., SMITH M., GEORGE A., CHENG G., BRENNAN T., HENRY R., et al.
ACS Spring 2010 National Meeting & Exposition, 21 - 25 March 2010

Harnessing the effect of ionic liquid pretreatment on Eucalyptus

PERSİL ÇETİNKOL Ö.
ACS Spring 2010 National Meeting & Exposition, 21 - 25 March 2010

Selective High Affinity Synthetically Accessible Ligands for G Quadruplex DNA Thermodynamic and Structural Studies of Azacyanines

ENGELHART A., PERSİL ÇETİNKOL Ö., NANJUNDA R., WILSON D., HUD N.
Albany 2009: The 16th Conversation, 16 - 20 June 2009 identifier

Small molecules that enhance GAA TTC fragility

LOBACHEV K., KIM H., NARAYANAN V., PERSİL ÇETİNKOL Ö., HUD N.
Albany 2009: The 16th Conversation, 16 - 20 June 2009 identifier

2 D NMR Investigation of Ionic Liquid Pretreatment on Eucalyptus

PERSİL ÇETİNKOL Ö., DIBBLE D., PELTON J., WEMMER D., SIMMONS B., HOLMES B., et al.
31st Syposium on Biotechnology for Fuels&Chemicals, 3 - 06 May 2009

Identification of Genes Involved in Acetylation of Cell Wall Polysaccharides in Arabidopsis thaliana

MANABE Y., SMITH M., ORFILA C., MANISSERI C., PERSİL ÇETİNKOL Ö., HOLMES B., et al.
Genomics of Energy and Environment; Fourth Annual DOE Joint Genome Institute User Meeting, 25 - 27 March 2009

Nanomolar Selective G Quadruplex Ligands from One Pot Thermodynamic and Structural Studies of Azacyanines

ENGELHART A., PERSİL ÇETİNKOL Ö., NANJUNDA R., WILSON D., HUD N.
Southeast Regional Meeting of the ACS, 12 - 15 November 2008

Exploring small molecules that promote the poly rA self structure

PERSİL ÇETİNKOL Ö., HUD N.
Southeast Regional Meeting of the ACS, 1 - 04 November 2006

Controlling nucleic acid assembly by small molecule binding Formation of antiparallel dA n dA n duplexes in the presence of coralyne

PERSİL ÇETİNKOL Ö., SANTAI C., JAIN S., HUD N.
Albany 2005: The 14th Conversation, 14 - 18 June 2005

Books & Book Chapters

Biosensors for Nucleic Acid Detection

Persil Çetinkol Ö.
in: Advanced Sensor Technology Biomedical, Environmental, and Construction Applications, Ahmed Barhoum,Zeynep Altintas, Editor, Elsevier Science, Oxford/Amsterdam , New York, pp.173-233, 2022

Small molecule recognition of poly(A)

PERSİL ÇETİNKOL Ö.
in: Polyadenylation Methods and Protocols, Rorbach Joanna, Bobrowicz Agnieszka J., Editor, Springer, New-York, pp.81-108, 2014

Metal Ion Interactions with G-Quadruplex Structures

AARON E., PLAVEC J., PERSİL ÇETİNKOL Ö., HUD N.
in: Nucleic Acid Metal Ion Interactions, Hud, Nicholas, Editor, RSC Publishing, Cambridge, pp.118-153, 2009

Metrics

Publication

40

Citation (WoS)

685

H-Index (WoS)

13

Citation (Scopus)

580

H-Index (Scopus)

12

Citiation (TrDizin)

1

H-Index (TrDizin)

1

Project

22

Thesis Advisory

13

Open Access

7
UN Sustainable Development Goals