Application of CRISPR/Cas9 Pooled Screening for a Non-immediate Readout Model


TERZİ ÇİZMECİOĞLU N.

Methods in molecular biology (Clifton, N.J.), cilt.2849, ss.87-116, 2024 (Scopus) identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 2849
  • Basım Tarihi: 2024
  • Doi Numarası: 10.1007/7651_2024_529
  • Dergi Adı: Methods in molecular biology (Clifton, N.J.)
  • Derginin Tarandığı İndeksler: Scopus, Biotechnology Research Abstracts, CAB Abstracts, MEDLINE
  • Sayfa Sayıları: ss.87-116
  • Anahtar Kelimeler: Cas9, CRISPR, Differentiation, Neuroectoderm, Pooled screening, Sox1GFP
  • Orta Doğu Teknik Üniversitesi Adresli: Evet

Özet

Linking phenotypes to genetic components has been an essential part of novel drug discovery, and screening methods have been widely employed to achieve such a goal. Screens can be conducted in either pooled or arrayed formats. Although arrayed screenings provide a better and cheaper alternative in small scale, the larger-scale screenings are conducted in pooled manner. With its adaptability to various models and conditions, CRISPR/Cas9 technology provides an invaluable alternative to classical and RNAi-based screening methods. Combined with high-throughput sequencing and bioinformatics, CRISPR-/Cas9-based pooled screening methods provide unbiased and robust data. In this protocol, we employed CRISPR-/Cas9-based pooled screening for a non-binary and non-immediate readout.