© 2022 by the authors. Licensee MDPI, Basel, Switzerland.The present study aimed to assess the relationship of soil properties in salt-affected soils. The soil samples were collected from 14 districts of Pakistan. Soil salinity and sodicity are the com-mon features of the arid and semiarid regions. The effects of the salt’s interactions with soil micro-nutrients have not been well studied. Therefore, saline and non-saline soil samples were collected from different locations. The microelements (Fe, Cu, Mn, and Zn) were fractionated into water-sol-uble, exchangeable, carbonate, Fe + Mn oxide, organic, and residual fractions. Univariate and multivariate analysis (PCA) was carried out to determine the linear relationship between soil properties and micronutrients fractions. Results showed that the magnitude of micronutrients appeared to be affected by the salinity in soils. In saline soil, the Fe fractions differed in the order of residual > organic bound > Fe + Mn bound > carbonate bound > exchangeable > water soluble. Iron fractions varied in the non-saline soils as residual > Fe + Mn bound > organic bound > exchangeable > carbonate bound > water soluble. Copper concentration was higher in the residual and carbonate forms, and the amount was lower in the exchangeable and water-soluble forms under both saline and non-saline conditions. The water-soluble Mn fraction was lower, and the residual Mn fraction was proportionately higher than other forms of Mn in soils. Zinc was found mostly in the residual fraction in both saline and non-saline soils. The mobility factor of micronutrients in non-saline soil was greater than in saline soil. PCA revealed that organic matter (OM) and pH directly affected the fractionation of Cu, Mn, Zn, and Fe in soil. Thus, it could be inferred that salts can bring changes to the composition of micronutrients depending on the nature of the soil and the magnitude of salts.